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Report for Sequence Feature Glyma10g05280

Feature Type:gene_model
Chromosome:Gm10
Start:4092402
stop:4094839
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g05280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09520AT Annotation by Michelle Graham. TAIR10: exocyst subunit exo70 family protein H4 | chr3:2923743-2925629 FORWARD LENGTH=628 SoyBaseE_val: 0ISS
GO:0006887GO-bp Annotation by Michelle Graham. GO Biological Process: exocytosis SoyBaseN/AISS
GO:0006904GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis SoyBaseN/AISS
GO:0000145GO-cc Annotation by Michelle Graham. GO Cellular Compartment: exocyst SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
KOG2344 KOG Exocyst component protein and related proteins JGI ISS
PTHR12542Panther EXOCYST COMPLEX PROTEIN EXO70-RELATED JGI ISS
PTHR12542:SF7Panther EXOCYST COMPLEX PROTEIN EXO70 JGI ISS
PF03081PFAM Exo70 exocyst complex subunit JGI ISS
UniRef100_D7L7W0UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATEXO70H4 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L7W0_ARALL SoyBaseE_val: 0ISS
UniRef100_UPI000233CAF6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CAF6 related cluster n=1 Tax=unknown RepID=UPI000233CAF6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g05280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g05280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g046000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g05280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g05280
>Glyma10g05280.2   sequence type=CDS   gene model=Glyma10g05280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTCCAATTCGAGGTCAAAAATCTCCTCCAGGTGACCAACACGTGTAGAATTACGCACCCACACACGAAAACACCCTTCATCATTCATCAAATACTTGCAGTGCCACGGAAAACATTATTCGTCTTACCCGAAAACAAACACACACTTCCTATTACTGCTAAAACGCCGTCGTTTACTGAAAATATGAGATTCATTTGCTTCGAGCCGAAAACGCAGTCGTTTTCCTTTTCCCGCCACACTCCGCCAACGAGTTCATCATCACCTTCTACAAGCACTAAGGAGAGCTTTGAAGAAGCAGAAACTCTGATACTAAAATGGAACCCTGAAACCTCTGCGTACGGAAGAGTAACCTCTCTCTTCTACAACGACAAAGCTGAAGCCATGCACTACATCCACTGCGTTAACATGCTTCAGAAAACCATGCACTCTTTGATCTCTCAGAACGCTTCCTCGCAGAAACTCATTCTCGCCCATAACCTAATGCAAATGGCCATGAAGACACTCCAGAAAGAGTTCTATCAGATATTATCAATGAACCGGGCCCACCTTGACCCTGAATCCGTCTCCACCAGATCCTCCACCACTTCAACAAGAACCTCTTTCTGTTCCGACAGTTACGACGGCGGCACAGCGGAAGAAGATGTTCGCGAATCGGGGGATTGTATCTCCGAAGTCGAACGTGTTTCTTCTGAAGCCATGGCGGATCTGAAATCCATCGCGGATTGCATGATTTCCAACGGTTATGCGAAGGAATGCGTCAGCGTTTACACGACCATGAGAAAATCGATCGTCGACGAAGGCATTTATCGCCTCAACGTGGAGGAGTTTAGTTCCTCGAAGGTGAACAAGATGCACTGGGATGTGCTCGAGTTGAAAATCAAGAGCTGGTTGGAGGCGGTTAAGATCGCCGTGAGGACGCTCTTCGCAGGAGAGAGGATCCTCTGCGATCACGTATTCGGTGCGTCGCAATCCATCAGTGAAGCTTGCTTCGCCGAGATTTCTAGAAGCGGAGCAAATCTGCTGTTCGGATTCCCCGAACTAGTCGCAAAAACGAAGAAATCGCCGCCGGAGAAGATCTTCCGGATGATTGATATGTACGCTGCAATAGCCGGGATGTGGTCGGAGATTGAATCGATATTCTCGCTCGATTCAACAACAGCTGTTAAATCTCAAGCCTACGGTCTTCTTCTCGGACTCTCCGAGTCTGTACGAACGAGTTTATCGGACTTTGCGACCGCAATTCAGAAAGACTCTTCCAAATCGACGGCGAACTTCGCCGGCGTTCATTCCCTGACAGTGCAAGTGATGAATCACTTGACTACTCTCGCGGATTACAGCAACGTGCTCTCGGAAATTTTCTTCGACGTGCCACCGCCGCCGAGGTCGCCGTTGCCGGAATCTTACTTATACAGTCCAGAATCCGACAACACCACCACGACGGAGACGGAGTTTTCAGTGCAGATGGCGCGGCTTATTCTGATTCTTCTCTGCAAGATCGACGGGAAATCAAGGTATTACAAGGAAGTTTCGTTGTCATACCTGTTTCTCGCGAACAATCTCCGGCACATACTGGCCAAGGTCCGTGCGTCGAACTTGCATTACGTTCTCGGCGACGATTGGGTTTTGAATCATGATGCGAAGGTGAAGAGGTTGACGGCGAACTATGAGAGAGTGGCGTGGGGCAAAGTGCTTTCGTCTTTGCCGGAAAATCCAACGGCGGAAATGTCGGCGGCGGAGGCGAGGGTTATGTTCGGGAATTTCAATTTTGAATTCGAGAAAGCTTATCGGAGAGAGAACACGTTCACCGTGCCGGAACAGGAATTTCGAGAAGAAATCAAAGCGTCTCTTGTGAGAAAAATAACCCCAATTTACCGCGAGGCGTATGAAACGCACCGTATTGTAATGGGAACGGTGAGGGAAATAAGAGAGTATGTCACATTTGCCCCTGAAGATGTTGAGAATTACATGATGAATCTTTTCTCTGAGGGAAGAGCGAGCTCCGGTAGCGGAGGAAACAAGTCATGTTTTGTAAAGTGTAAAAAATGCAAATGA
Predicted protein sequences of Glyma10g05280
>Glyma10g05280.2   sequence type=predicted peptide   gene model=Glyma10g05280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFQFEVKNLLQVTNTCRITHPHTKTPFIIHQILAVPRKTLFVLPENKHTLPITAKTPSFTENMRFICFEPKTQSFSFSRHTPPTSSSSPSTSTKESFEEAETLILKWNPETSAYGRVTSLFYNDKAEAMHYIHCVNMLQKTMHSLISQNASSQKLILAHNLMQMAMKTLQKEFYQILSMNRAHLDPESVSTRSSTTSTRTSFCSDSYDGGTAEEDVRESGDCISEVERVSSEAMADLKSIADCMISNGYAKECVSVYTTMRKSIVDEGIYRLNVEEFSSSKVNKMHWDVLELKIKSWLEAVKIAVRTLFAGERILCDHVFGASQSISEACFAEISRSGANLLFGFPELVAKTKKSPPEKIFRMIDMYAAIAGMWSEIESIFSLDSTTAVKSQAYGLLLGLSESVRTSLSDFATAIQKDSSKSTANFAGVHSLTVQVMNHLTTLADYSNVLSEIFFDVPPPPRSPLPESYLYSPESDNTTTTETEFSVQMARLILILLCKIDGKSRYYKEVSLSYLFLANNLRHILAKVRASNLHYVLGDDWVLNHDAKVKRLTANYERVAWGKVLSSLPENPTAEMSAAEARVMFGNFNFEFEKAYRRENTFTVPEQEFREEIKASLVRKITPIYREAYETHRIVMGTVREIREYVTFAPEDVENYMMNLFSEGRASSGSGGNKSCFVKCKKCK*






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