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Report for Sequence Feature Glyma10g05260

Feature Type:gene_model
Chromosome:Gm10
Start:4072370
stop:4077398
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g05260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G53520AT Annotation by Michelle Graham. TAIR10: UDP-glucuronic acid decarboxylase 1 | chr3:19841635-19844057 FORWARD LENGTH=435 SoyBaseE_val: 0ISS
GO:0009225GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process SoyBaseN/AISS
GO:0042732GO-bp Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process SoyBaseN/AISS
GO:0044237GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metabolic process SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0048040GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glucuronate decarboxylase activity SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
KOG1429 KOG dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase JGI ISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF35Panther gb def: udp-glucose 4-epimerase [bacillus halodurans] JGI ISS
PF01370PFAM NAD dependent epimerase/dehydratase family JGI ISS
UniRef100_G8XR16UniRef Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucuronic acid decarboxylase 1 n=1 Tax=Gossypium hirsutum RepID=G8XR16_GOSHI SoyBaseE_val: 0ISS
UniRef100_I1L8M8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8M8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g05260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05260
ParalogEvidenceComments
Glyma13g19640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g045800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g05260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g05260
>Glyma10g05260.1   sequence type=CDS   gene model=Glyma10g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACAGCTCCACAAGCAAACGAGTCTGAATCACCGGAGGGAGGAAGAGATGTTGGGGAGCAGCGAGAGCTCACCCTACTCCCCCAAATCCATCAAGCACACCAGATCTCTCCCCAGATCCATCAACTACCTCCTCCGCGAGCAGCGCCTCTTGTTCATCCTCGTCGGCATCCTCATCGGCTCCACCTTCTTCATCATCCAGCCCACTCTCTCCCGCATGGGCCCACCCGAGCCGGCCCACACATTCCTCCCTCGAACCGGGCTTGCCCGCTTCAGCGGCACAAGGCCTCGCACGGGCCGCGTTCCGGTCGGGATCGGCGGCAGGAGGCAGCGAATCGTCGTCACCGGCGGCGCGGGCTTCGTCGGGAGCCACCTCGTCGACAAACTCATCGCTCGCGGTGACGACGTCATCGTGATCGACAATTTCTTCACGGGAAGAAAAGAGAACCTGGTGCATCTGTTCGGGAACCCTAGGTTCGAGCTCATTCGCCACGACGTCGTTGAGCCGATTCTGTTGGAGGTTGATCAGATCTACCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCAAGACGAATGTGATGGGCACGCTTAACATGCTTGGCCTTGCGAAGAGAATTGGGGCTAGGTTTCTGCTTACTAGTACTAGTGAGGTTTACGGTGATCCGTTGGAGCATCCTCAGAAAGAGACTTACTGGGGAAATGTGAATCCAATCGGTGAGAGGAGCTGTTACGATGAAGGGAAAAGGACTGCGGAGACGTTGGCCATGGATTATCATCGGGGTGCTGGTGTTGAGGTTCGTATTGCTCGAATTTTCAACACATATGGACCCCGCATGTGTTTGGATGATGGGCGTGTTGTTAGCAATTTTGTTGCACAGGCTATTCGTAAACAACCATTGACTGTATATGGTGATGGGAAGCAAACAAGAAGTTTCCAATATGTCTCTGATTTGGTTAATGGGCTGGTGGCTTTGATGGAAAGCGAACATGTGGGACCTTTCAACCTGGGTAACCCAGGGGAGTTTACCATGTTAGAGCTTGCTCAGGTTGTCAAAGAAACAATTGATTCAAGTGCTACAATAGAATACAAACCAAATACTGCTGATGATCCACACATGAGGAAGCCAGATATTAGCAAAGCCAAGGAACTGCTGAACTGGGAGCCAAAAATCCCTCTGAGAGAAGGGTTGCCTCTCATGGTTAATGATTTCCGAAATCGAATTCTGAATGAAAACGAAGGAAAAGGGATGAAATAA
Predicted protein sequences of Glyma10g05260
>Glyma10g05260.1   sequence type=predicted peptide   gene model=Glyma10g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQLHKQTSLNHRREEEMLGSSESSPYSPKSIKHTRSLPRSINYLLREQRLLFILVGILIGSTFFIIQPTLSRMGPPEPAHTFLPRTGLARFSGTRPRTGRVPVGIGGRRQRIVVTGGAGFVGSHLVDKLIARGDDVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRKQPLTVYGDGKQTRSFQYVSDLVNGLVALMESEHVGPFNLGNPGEFTMLELAQVVKETIDSSATIEYKPNTADDPHMRKPDISKAKELLNWEPKIPLREGLPLMVNDFRNRILNENEGKGMK*






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