SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G37460 | AT | Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein | chr2:15726667-15729010 REVERSE LENGTH=380 | SoyBase | E_val: 2.00E-158 | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| PF00892 | PFAM | EamA-like transporter family | JGI | ISS | |
| UniRef100_G7IBM5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=2 Tax=Medicago truncatula RepID=G7IBM5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L8L9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L8L9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g05141 not represented in the dataset |
Glyma10g05141 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g19520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g044800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g05141.1 sequence type=CDS gene model=Glyma10g05141 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGACACAAAATTGGTTCGAGAGATTGAAGCCTTTCGCAGCTGTGGTATCAATACAGTTTGGATATGCAGCTATGGATGTTCTATCCAAGGCTGCAATGAACAAAGGGATGAGCAATTATGTGTTTGTTGTTTATCGCCATGCTGTTGCATTCTTTGTTATGGCCCCTTTGGCATGGTTTTTTGACAAGAAAGTAAGGCCAAAGATGACATTCTCAATTTTCATGAAGATAGCGGTGCTCAGCTGGATAGAGCCAGTTATTGACCAGAATTTGTATTTTTTGGGGATGAAGTACACAACAGCAACCTTTGCCGTTACCATAACCAATATGCTTCCTGCCATTACCTTTATCTTCGCATGCATTCTTAGGCTTGAGAAGATTAAAATAAGAAGTATACGGAGCCAAGCAAAGGTGGTGGGAACCCTAACAACTGTTTCGGGAGCCATGGTCATGACACTCCTGAAAGGGCCAGTACTTTTCGGGTCACACGGAAGCAATGATCACAGCCAGCATAATGGGACAAGTATGCGACATACAATAACAGGATTCATATTGATCACAATTGGATGCTTTTGTTGGGCTTGTTTCGTGATCCTACAAGCTACTACCCTTAAAACCTACCCTGCTGAACTCTCTCTTTCTGCTTGGATATGCTTAATGGGCACACTTGAAGGTGCCGCAGTGGCTATGATTATGGAAAGGGGCAACCCTTCAGTTTGGTCTCTAAAATTGGACATGAAACTGCTATGTGCTGTCTACTCTGGTATAGTGTGCTCAGGAATGAGCTATTACTTGCAAGGAGTAGTGATGAAAACTAGAGGCCCAGTCTTCGTAACAGCATTTAGTCCCCTCTGCATGGTAATCGTGGCTGTCATGAGCTACTTCATTCTGGCCGAACAAGTGTTCCTTGGAAGGGTGATCGGTGCCGTTATCATTTGTTTGGGCCTATATGCTGTGGTGTGGGGCAAAAGCAAAGATTGTAGCCCACGAAGCCCAAATACTCAAGAGCCCATATTACTGGCAAAGCAAATAGTAAATGAGGACAATGCTAAGAAGGAAAATTGCAATTGCACTCACGAAGTCATCAACGCCAACAATTTTGAAAATGGAATCACTAGAAACGAAGAACAAGTGTGA
>Glyma10g05141.1 sequence type=predicted peptide gene model=Glyma10g05141 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high METQNWFERLKPFAAVVSIQFGYAAMDVLSKAAMNKGMSNYVFVVYRHAVAFFVMAPLAWFFDKKVRPKMTFSIFMKIAVLSWIEPVIDQNLYFLGMKYTTATFAVTITNMLPAITFIFACILRLEKIKIRSIRSQAKVVGTLTTVSGAMVMTLLKGPVLFGSHGSNDHSQHNGTSMRHTITGFILITIGCFCWACFVILQATTLKTYPAELSLSAWICLMGTLEGAAVAMIMERGNPSVWSLKLDMKLLCAVYSGIVCSGMSYYLQGVVMKTRGPVFVTAFSPLCMVIVAVMSYFILAEQVFLGRVIGAVIICLGLYAVVWGKSKDCSPRSPNTQEPILLAKQIVNEDNAKKENCNCTHEVINANNFENGITRNEEQV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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