Report for Sequence Feature Glyma10g05130
Feature Type: gene_model
Chromosome: Gm10
Start: 3967424
stop: 3971420
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g05130
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G53620 AT
Annotation by Michelle Graham. TAIR10: pyrophosphorylase 4 | chr3:19881491-19883308 FORWARD LENGTH=216
SoyBase E_val: 5.00E-137 ISS
GO:0006796 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphate-containing compound metabolic process
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0046686 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cadmium ion
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0000287 GO-mf
Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding
SoyBase N/A ISS
GO:0004427 GO-mf
Annotation by Michelle Graham. GO Molecular Function: inorganic diphosphatase activity
SoyBase N/A ISS
KOG1626
KOG
Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38
JGI ISS
PTHR10286 Panther
INORGANIC PYROPHOSPHATASE
JGI ISS
PF00719 PFAM
Inorganic pyrophosphatase
JGI ISS
UniRef100_C6SY00 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SY00_SOYBN
SoyBase E_val: 3.00E-154 ISS
UniRef100_G7ICM1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Soluble inorganic pyrophosphatase n=3 Tax=Medicago truncatula RepID=G7ICM1_MEDTR
SoyBase E_val: 3.00E-140 ISS
Expression Patterns of Glyma10g05130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g05130
Paralog Evidence Comments
Glyma13g19500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g05130 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g044700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g05130
Transcripts of Glyma10g05130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g05130.2 sequence type=transcript gene model=Glyma10g05130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATTTTGAAAAAGGTGAAGTGCATAAGGCCTGTGTCTGTGAAACAGCAACGAGAGCGGGAACGAGTTGCGTACACCTCACATCCTCCTCCTCCTCCTCCTCTACCTCTACATAAGCGCCCTCGCATCACATTCTTTGCAGACTCAACAAGCATTCATTTCATTTCACTCACTCACTCTTCGTTTCGTTTCTCTTTCTCACTCTAGATCTGTGTTTCTCTCTCCAACCTTCGTTTCACCACACTTCCATCACTTGTCGAGTGTAGAAATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTATCAGCACTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAAACATGTTGCTGCTCACCCGTGGCATGATCTTGAGATAGGACCTGAAGCTCCAAAGATCTTCAACTGTGTGGTTGAAATTGGGAAAGGAAGTAAGGTGAAATATGAACTTGACAAAAGAACTGGTCTTATTATGGTTGATCGTATCCTTTACTCATCGGTTGTGTATCCTCACAACTATGGGTTTATCCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAGGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGACCTTCCTCCTCACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTGTATCCTTTCCAAGAATTTCAAAATGTGTTTGTTCAGTACTTCCTATATGTTAGCATCTATATAGGTAATCATTTGGCGTGCCATATAAAATCAAACTATTTTATGTTTTCCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGAGCTTGGAATTTTGTTTGGTTGTGAAGACATACATGCTTTCAAAGGCTGCTATTATAATTGCGATTATGACGATAAGAAAACCTTTCTATCCTTGTCGCGTGTGCATTTGGTCTCAGGGCTGGCAACATGCATATTCTGCACATGTGCTTAATTTTGAGTGAATGATTTTTATTTATTTATTAATATCAAAGTTTTAATGTTGTAGCTCAATCTACCAAATATTTGGAGCATATGGGATTCCTATATATCTTATATATATACATAAAACATTTTTACAACAATTATTAGTACCATGTTTTCTGTGCTTATTTCCGTTGTTGCCCCCGAAAATTTCATTGAATCAAAAATCAAATTGTTGAATTGCTTTTCATGCA
Coding sequences of Glyma10g05130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g05130.1 sequence type=CDS gene model=Glyma10g05130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTATCAGCACTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAAACATGTTGCTGCTCACCCGTGGCATGATCTTGAGATAGGACCTGAAGCTCCAAAGATCTTCAACTGTGTGGTTGAAATTGGGAAAGGAAGTAAGGTGAAATATGAACTTGACAAAAGAACTGGTCTTATTATGGTTGATCGTATCCTTTACTCATCGGTTGTGTATCCTCACAACTATGGGTTTATCCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAGGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGACCTTCCTCCTCACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAG
>Glyma10g05130.2 sequence type=CDS gene model=Glyma10g05130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTCCACCAATTGAGACCCCAACCAAGGTTTCCAGCTATCAGCACTCCCCAAACCCTCGTCTTAACGAGAGGATTCTTTCATCCATTTCCAGGAAACATGTTGCTGCTCACCCGTGGCATGATCTTGAGATAGGACCTGAAGCTCCAAAGATCTTCAACTGTGTGGTTGAAATTGGGAAAGGAAGTAAGGTGAAATATGAACTTGACAAAAGAACTGGTCTTATTATGGTTGATCGTATCCTTTACTCATCGGTTGTGTATCCTCACAACTATGGGTTTATCCCACGTACTATTTGTGAGGACGGTGATCCCATGGATGTCTTGGTTATCATGCAGGAGCCAGTTCTTCCAGGTTGCTTTCTACGGGCCAAAGCTATTGGACTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCTGAGTATAGGCATTACAATGATATCAAGGACCTTCCTCCTCACCGTTTAGCTGAAATTCGTCGTTTCTTTGAAGATTGTATCCTTTCCAAGAATTTCAAAATGTGTTTGTTCAGTACTTCCTATATGTTAGCATCTATATAG
Predicted protein sequences of Glyma10g05130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g05130.1 sequence type=predicted peptide gene model=Glyma10g05130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPPIETPTKVSSYQHSPNPRLNERILSSISRKHVAAHPWHDLEIGPEAPKIFNCVVEIGKGSKVKYELDKRTGLIMVDRILYSSVVYPHNYGFIPRTICEDGDPMDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKDLPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASAAYEAIKHSMTLYAEYVVENLRR*
>Glyma10g05130.2 sequence type=predicted peptide gene model=Glyma10g05130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPPIETPTKVSSYQHSPNPRLNERILSSISRKHVAAHPWHDLEIGPEAPKIFNCVVEIGKGSKVKYELDKRTGLIMVDRILYSSVVYPHNYGFIPRTICEDGDPMDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKDLPPHRLAEIRRFFEDCILSKNFKMCLFSTSYMLASI*