Glyma10g05080 - SoyBase

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Report for Sequence Feature Glyma10g05080

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3941930
stop:	3951473
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37520	AT	Annotation by Michelle Graham. TAIR10: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain \| chr2:15745033-15749615 REVERSE LENGTH=829	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF00628	PFAM	PHD-finger	JGI		ISS
UniRef100_G7ZZK5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromodomain-helicase-DNA-binding protein n=1 Tax=Medicago truncatula RepID=G7ZZK5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C974	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C974 related cluster n=1 Tax=unknown RepID=UPI000233C974	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05080

Paralog	Evidence	Comments
Glyma13g19440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g044200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g05080

Limit To All Plant Sequences

>Glyma10g05080.2   sequence type=CDS   gene model=Glyma10g05080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAGGAAGCGGATTGTGTGCATGCATTAGAAGAAGGAAAGAAGGAGAACAATGAGGAATCAAGGACGGAACTGAAGCGTGACTACGACCAATGCGTTGCTGATACTGAACCTAACGTGTCTCCTAATAAGAAACAGGCGAAAGAAGTTTCAAATGATGAAGTGCGTTCTGAGGTTTCCAACCCCAATGTTTCTGCAGCAGAGCATGCACTGACTTTTCAAGATATCAGTAGTCAACCAACTGAATCCGAAAATGTTAACCATGCGGAGTGTGGGGAACTGACGTCTACTTGCTTGGAGAATTCAAGTTCTGATGAGACCTTGAGTGATGAAGCTGGTGAACATAATAATAATAATAATAATAATAATAATAATAATACTTCTCAAAGTGATAAGGACACAGGTAGTGCTGCAATGACATCCTGTGTGGTGATGGAAATCCCCAAGCATGTGAGTTCATCTGGGATCAGGAAAATTACTTTTAAATTCAGTAAGAAGAAGGAGGACTATGATTACCAACCGCCTCCAGCTGTGCACCATCCTGCTCTTTATAATGATGGGAATCACATTGGCTTCCATGGGGATGATGAAGAATATTTGGCAAGGGATGATTGTAGTGGTGGGTCATTAGAAAGCCCGTGTGGAATGGGATATGTTCATGATGGAGATTTGGATTTGTACACTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTCCCCAACTGCTACCCTACAAATGTCAAAAAGCTTTTATCAACTGGCATTCTTGACGGAGCTGTAGTGAAGTATATTTACAATCCTGGAAAGGTTGAGCTACAGGGGATTATTGATGGTGGCGGATATTTGTGTGGCTGTTCAATGTGCAATTACTCTAGAGTTCTTAGTGCCTATGAGTTCGAGCAGCATGCTGGAGCCAAGACTAGACATCCAAATAATCATATATTCTTAGAAAATGGAAGACCGATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGTATACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAATGAGGAGTCCTTCCAAGCTTGGAAAGAAAGTCTTCTACAAAGCAACGGCAAGGTTCAGGCTCATAAAAGTTATAGCACCAAACTTGTTGGCATGCCTCATACAAACATAAGTCAATCTGTAGAAAGTACAAGCCACTTGTCAACTTTGCACGTACCGAGTCATTATGAGCAGCACATGTATATGAATCAGACAACTGACGAATGGCGTGTGGTGAAAAAGCCAAGCTCCTACACTTCTAACACAGGTGTACTGCAGAAAAGAAGTGCTGATGGTTGCACTAAGAGAAGGGACAATGATTTACACAGGTTGCTTTTTATGCCAAATGGGCTACCAGATGGTGCTGAGTTGGCTTACTATGTTAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTGGTTGTTGTGATATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGGCGTCAACCTTACCGACACATATATACTTCCAATGGATTAACACTTCATGACATAGCTCTATCGTTGGCCAATGGTCAAAACCTTACCACGGGAGACAGTGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCCAGGGCATTTCATGCAGCATGCTTGGGTTTACAGTGTGTTCCAGACAGTGGTTGGCAATGTCTAAATTGTAGAGATAATGCCGGTAATGGAAGAGAATCTTCTATTGTGAGGCCAATCATGATACGGTTGACACGGGTTGATAAAACACCAGAATTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGAACGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGAGACATTGGGCTATGTGAGTTGGAAGAGCTTCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGGATATATGTGGCACTACAGAATTCAGTTGCTGCTGGAGCAGAAATTATACCAGCTTCCGTGTCTGAACTAATAATCAGGAAGCATGAGGACAAGGGATTATGTACCTATGGGGCCATGAATGATATCCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCGGAACATTTACCATTGCTTTCACGAGCTGCTGCAATTTTCCGAGAATGTTTTGATCCCATTGTTGCCATATCTGGTCGTGATCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCTGTTGTAGTATCTGCTGGGCTTCTTAGGATTTTTGGCCGTAATGTTGCTGAGCTTCCACTAGTCGCCACAAGCAGAGCACATCAAGGAAAAGGTTATTTTCAAGTGTTGTTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAACGTAGAAAAGTTGGTGCTTCCTGCAGCAGGGGATGCTGAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGCGAAGATCAGTTATCCAAACATCTCAGAGAGGTGCAGCTAACACTCTTCAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCTGGCTATAGAATGA

Predicted protein sequences of Glyma10g05080

Limit To All Plant Sequences

>Glyma10g05080.2   sequence type=predicted peptide   gene model=Glyma10g05080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEEADCVHALEEGKKENNEESRTELKRDYDQCVADTEPNVSPNKKQAKEVSNDEVRSEVSNPNVSAAEHALTFQDISSQPTESENVNHAECGELTSTCLENSSSDETLSDEAGEHNNNNNNNNNNNTSQSDKDTGSAAMTSCVVMEIPKHVSSSGIRKITFKFSKKKEDYDYQPPPAVHHPALYNDGNHIGFHGDDEEYLARDDCSGGSLESPCGMGYVHDGDLDLYTRNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELQGIIDGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFQAWKESLLQSNGKVQAHKSYSTKLVGMPHTNISQSVESTSHLSTLHVPSHYEQHMYMNQTTDEWRVVKKPSSYTSNTGVLQKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLQCVPDSGWQCLNCRDNAGNGRESSIVRPIMIRLTRVDKTPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVAAGAEIIPASVSELIIRKHEDKGLCTYGAMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNVAELPLVATSRAHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKHLREVQLTLFNKTSMLEKTVQLAIE*

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