Glyma10g05060 - SoyBase

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Report for Sequence Feature Glyma10g05060

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3932300
stop:	3934283
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G46010	AT	Annotation by Michelle Graham. TAIR10: actin depolymerizing factor 1 \| chr3:16909679-16910678 REVERSE LENGTH=150	SoyBase	E_val: 3.00E-84	ISS
GO:0007015	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament organization	SoyBase	N/A	ISS
GO:0030042	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament depolymerization	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin binding	SoyBase	N/A	ISS
KOG1735	KOG	Actin depolymerizing factor	JGI		ISS
PTHR11913	Panther	ACTIN DEPOLYMERIZING FACTOR	JGI		ISS
PF00241	PFAM	Cofilin/tropomyosin-type actin-binding protein	JGI		ISS
UniRef100_D9I9X9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Actin-depolymerizing factor n=1 Tax=Hevea brasiliensis RepID=D9I9X9_HEVBR	SoyBase	E_val: 9.00E-90	ISS
UniRef100_I1L8L2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8L2_SOYBN	SoyBase	E_val: 4.00E-102	ISS

Expression Patterns of Glyma10g05060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05060

Paralog	Evidence	Comments
Glyma13g19430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g044000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g05060

Limit To All Plant Sequences

>Glyma10g05060.3   sequence type=transcript   gene model=Glyma10g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGATACGCTTTCCGCGTGCCACAATATAAATTCAATTTCTGCCCCCCACCAATTTAACTTCATTTTCTCCTTCCGTTCCTTTCTTCGTTCCTTCCCCAACCCAATCTTCGCCTTCGCCCACAACAACTCCTCCTTCAGGATCGCTGCCAACGTTACTTTCCATTTTTACCCTTCATCCTCGAGAAAAAAATGGCGAACGCAGCATCTGGTATGGCCGTCCATGATGAGTGCAAGCTAAAGTTTCTGGAGCTCAAGGCGAAGAGGACGTACCGGTATATCGTTTTTAAGATTGAGGAGAAATCGAAGCAAGTTATTGTGGAGAAGCTGGGTGACCCTGCAAATGGCTATGATGAATTCGCTGCCAGTCTTCCTGCTGATGAGTGTCGATATGCTGTTTATGATTTTGATTTTGTCACTGAAGAGAATTGCCAAAAGAGCAGAATTTTCTTCATTGCTTGGTCCCCTGATACATCTAGGGTTAGGAGCAAGATGATTTATGCCAGCTCCAAAGATAGATTCAAGAGGGAGCTTGATGGAATTCAGATTGAGCTGCAAGCAACTGATCCTACTGAGATGGGTCTTGATGTGTTCAAAAGCCGTGCCAATTAAATGATTCCGATTATTCATAAATAGGAGTTGTGATGGGGATGGTCAACTTGGCTAATTTGGACTCAATTTTCCAAGTTTTGACATGAGGTCTATTGCAGCTTCAACAAAGCTTCTCTTGTTCCAGTGTATCTTGTGGTTTGCGACATATAACCCGTGTTTGGGTGTAATCTTAGTCCTATTCCTAGTAGTTAATTTTGTAACTGTTCTTTGTGTGATTGAACGAAAATTTGGGACCAGGTATTGATGTAATGTTGCCAGTTGCCATCTTACTAATGTCTTATGACTTAAATTAACTAAAATACTTTCTTGAAAACAATTTAATACATATTATGAACTATGTTATCATAACAAAGTCGAGGGGTAAGTTTTGTGGATGCAAAACAATTGCGTTGGTATTGATGCATTTTAAAACA

Coding sequences of Glyma10g05060

Limit To All Plant Sequences

>Glyma10g05060.2   sequence type=CDS   gene model=Glyma10g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGAAATTTTACAGGCGAACGCAGCATCTGGTATGGCCGTCCATGATGAGTGCAAGCTAAAGTTTCTGGAGCTCAAGGCGAAGAGGACGTACCGGTATATCGTTTTTAAGATTGAGGAGAAATCGAAGCAAGTTATTGTGGAGAAGCTGGGTGACCCTGCAAATGGCTATGATGAATTCGCTGCCAGTCTTCCTGCTGATGAGTGTCGATATGCTGTTTATGATTTTGATTTTGTCACTGAAGAGAATTGCCAAAAGAGCAGAATTTTCTTCATTGCTTGGTCCCCTGATACATCTAGGGTTAGGAGCAAGATGATTTATGCCAGCTCCAAAGATAGATTCAAGAGGGAGCTTGATGGAATTCAGATTGAGCTGCAAGCAACTGATCCTACTGAGATGGGTCTTGATGTGTTCAAAAGCCGTGCCAATTAA

>Glyma10g05060.3   sequence type=CDS   gene model=Glyma10g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAACGCAGCATCTGGTATGGCCGTCCATGATGAGTGCAAGCTAAAGTTTCTGGAGCTCAAGGCGAAGAGGACGTACCGGTATATCGTTTTTAAGATTGAGGAGAAATCGAAGCAAGTTATTGTGGAGAAGCTGGGTGACCCTGCAAATGGCTATGATGAATTCGCTGCCAGTCTTCCTGCTGATGAGTGTCGATATGCTGTTTATGATTTTGATTTTGTCACTGAAGAGAATTGCCAAAAGAGCAGAATTTTCTTCATTGCTTGGTCCCCTGATACATCTAGGGTTAGGAGCAAGATGATTTATGCCAGCTCCAAAGATAGATTCAAGAGGGAGCTTGATGGAATTCAGATTGAGCTGCAAGCAACTGATCCTACTGAGATGGGTCTTGATGTGTTCAAAAGCCGTGCCAATTAA

Predicted protein sequences of Glyma10g05060

Limit To All Plant Sequences

>Glyma10g05060.2   sequence type=predicted peptide   gene model=Glyma10g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCEILQANAASGMAVHDECKLKFLELKAKRTYRYIVFKIEEKSKQVIVEKLGDPANGYDEFAASLPADECRYAVYDFDFVTEENCQKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKSRAN*

>Glyma10g05060.3   sequence type=predicted peptide   gene model=Glyma10g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANAASGMAVHDECKLKFLELKAKRTYRYIVFKIEEKSKQVIVEKLGDPANGYDEFAASLPADECRYAVYDFDFVTEENCQKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKSRAN*

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