Glyma10g05030 - SoyBase

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Report for Sequence Feature Glyma10g05030

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3913158
stop:	3919109
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g05030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37540	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr2:15751695-15753820 REVERSE LENGTH=321	SoyBase	E_val: 5.00E-161	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1208	KOG	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	JGI		ISS
PTHR24320	Panther	FAMILY NOT NAMED	JGI		ISS
PF00106	PFAM	short chain dehydrogenase	JGI		ISS
UniRef100_C6TA87	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TA87_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7ZZL2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Retinol dehydrogenase n=2 Tax=Medicago truncatula RepID=G7ZZL2_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g05030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g05030

Paralog	Evidence	Comments
Glyma13g19390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g05030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g043700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g05030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g05030

Limit To All Plant Sequences

>Glyma10g05030.2   sequence type=transcript   gene model=Glyma10g05030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCATTTACACACTAACCAGAAAAGGTTGAGAAAGAAAAACAGAGAGAGACGCAACCATCTTCCTTGTCCCTTCAGTTGGGGATCTGATTTGGTTTTTCTCTATTTGCGTGCGTGCTAGTATAGTCGTTGCTGCTCAGTATGGCGGGAATCTTTTCGTTGGTTACTGGGAGGCCGGGACTAAGTGGATTCGGATCTTCCTCAACTGCTGAACAAGTTACTGAAGGAATTGATGCCAGCAATCTCACTGCAATCATCACAGGAGGAGCGAGTGGCATAGGGTTGGAGACAGCACGTGTTCTGGCAATTCGAAAGGTCCATGTAATAATTGCTGCCAGGAACATGGAGTCTGCAAAGGAAGCTAAACAACTCATACTTCAGGAAGACGAGTCAGCATGTGTGGACATAATGAAGCTCGACCTATGCTCATTGAAGTCTGTCAGAACCTTTGTGGACAACTTCATTGCTCTTGGTCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCTTATCAGCAAACAGAAGATGGGATTGAGATGCAGTTTGCAACAAATTATCTTGGTCATTTCCTCTTGACGAACCTTCTTCTTGACAAGATGAAACAAACCGCAAAAGACACTGGAATTGAGGGCAGGATCGTAAATCTGTCATCAATTGCTCATCTCTACACTTACGAAGAAGGAATTCGATTTGATACCATCAATGATGAAGATGGATACCATGAGAAGAAGGCCTATGGACAGTCCAAGTTAGCCAACATATTACACACAAACGAGCTTTCTCGTCGCTTACAGGCAGAAGGTGTTAACATCACGGCCAACTCAGTCCACCCAGGGGTGATAATGACTCCTCTCATGAGACACTCTTCTTTACTAATGAATTTTCTGAAGATGTTCTCCTTCATGATATGGAAGAACGTCCCTCAGGGAGCAGCCACAACGTGCTATGTCGCTCTACACCCAAGCTTGAAAGGGGTAACGGGGAAGTACCTTCAGGATTGTAATGAGTCCCCACCAAGTGCACATGCGTCAAACGAACTCTTAGGAAGGAAACTGTGGGATTTTAGCAACAAGATGATTAATTCACTTTCAAAAGCTTGATTGATTGCACTATAGTATTTGTGCCAAACCCTCGTCTTCCTCATATCAGTGTATCAAAACTCGTTAATTATGCTTAATATACCCATCCACCCTACAGTTATAATCATAAGTTCTAAACATATGATTCGTGGTCATTGGTCCTTGACTCCATTTGTATTTTGTACGCGTAATATAGAGGTCTTATATACTCTTATTTATGTATCAAACGTATCCTTTAAATTAAAATTAAGGTAAAAGAAGTATGTTAATGATGATTTAGGCGAATATGCTGACTAGTTTAATCAGATTTTGACAAATCA

Coding sequences of Glyma10g05030

Limit To All Plant Sequences

>Glyma10g05030.1   sequence type=CDS   gene model=Glyma10g05030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGGAATCTTTTCGTTGGTTACTGGGAGGCCGGGACTAAGTGGATTCGGATCTTCCTCAACTGCTGAACAAGTTACTGAAGGAATTGATGCCAGCAATCTCACTGCAATCATCACAGGAGGAGCGAGTGGCATAGGGTTGGAGACAGCACGTGTTCTGGCAATTCGAAAGGTCCATGTAATAATTGCTGCCAGGAACATGGAGTCTGCAAAGGAAGCTAAACAACTCATACTTCAGGAAGACGAGTCAGCATGTGTGGACATAATGAAGCTCGACCTATGCTCATTGAAGTCTGTCAGAACCTTTGTGGACAACTTCATTGCTCTTGGTCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCTTATCAGCAAACAGAAGATGGGATTGAGATGCAGTTTGCAACAAATTATCTTGGTCATTTCCTCTTGACGAACCTTCTTCTTGACAAGATGAAACAAACCGCAAAAGACACTGGAATTGAGGGCAGGATCGTAAATCTGTCATCAATTGCTCATCTCTACACTTACGAAGAAGGAATTCGATTTGATACCATCAATGATGAAGATGGATACCATGAGAAGAAGGCCTATGGACAGTCCAAGTTAGCCAACATATTACACACAAACGAGCTTTCTCGTCGCTTACAGGCAGAAGGTGTTAACATCACGGCCAACTCAGTCCACCCAGGGGTGATAATGACTCCTCTCATGAGACACTCTTCTTTACTAATGAATTTTCTGAAGATGTTCTCCTTCATGATATGGAAGAACGTCCCTCAGGGAGCAGCCACAACGTGCTATGTCGCTCTACACCCAAGCTTGAAAGGGGTAACGGGGAAGTACCTTCAGGATTGTAATGAGTCCCCACCAAGTGCACATGCGTCAAACGAACTCTTAGGAAGGAAACTGTGGGATTTTAGCAACAAGATGATTAATTCACTTTCAAAAGCTTGA

>Glyma10g05030.2   sequence type=CDS   gene model=Glyma10g05030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGGAATCTTTTCGTTGGTTACTGGGAGGCCGGGACTAAGTGGATTCGGATCTTCCTCAACTGCTGAACAAGTTACTGAAGGAATTGATGCCAGCAATCTCACTGCAATCATCACAGGAGGAGCGAGTGGCATAGGGTTGGAGACAGCACGTGTTCTGGCAATTCGAAAGGTCCATGTAATAATTGCTGCCAGGAACATGGAGTCTGCAAAGGAAGCTAAACAACTCATACTTCAGGAAGACGAGTCAGCATGTGTGGACATAATGAAGCTCGACCTATGCTCATTGAAGTCTGTCAGAACCTTTGTGGACAACTTCATTGCTCTTGGTCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCTTATCAGCAAACAGAAGATGGGATTGAGATGCAGTTTGCAACAAATTATCTTGGTCATTTCCTCTTGACGAACCTTCTTCTTGACAAGATGAAACAAACCGCAAAAGACACTGGAATTGAGGGCAGGATCGTAAATCTGTCATCAATTGCTCATCTCTACACTTACGAAGAAGGAATTCGATTTGATACCATCAATGATGAAGATGGATACCATGAGAAGAAGGCCTATGGACAGTCCAAGTTAGCCAACATATTACACACAAACGAGCTTTCTCGTCGCTTACAGGCAGAAGGTGTTAACATCACGGCCAACTCAGTCCACCCAGGGGTGATAATGACTCCTCTCATGAGACACTCTTCTTTACTAATGAATTTTCTGAAGATGTTCTCCTTCATGATATGGAAGAACGTCCCTCAGGGAGCAGCCACAACGTGCTATGTCGCTCTACACCCAAGCTTGAAAGGGGTAACGGGGAAGTACCTTCAGGATTGTAATGAGTCCCCACCAAGTGCACATGCGTCAAACGAACTCTTAGGAAGGAAACTGTGGGATTTTAGCAACAAGATGATTAATTCACTTTCAAAAGCTTGA

Predicted protein sequences of Glyma10g05030

Limit To All Plant Sequences

>Glyma10g05030.1   sequence type=predicted peptide   gene model=Glyma10g05030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGIFSLVTGRPGLSGFGSSSTAEQVTEGIDASNLTAIITGGASGIGLETARVLAIRKVHVIIAARNMESAKEAKQLILQEDESACVDIMKLDLCSLKSVRTFVDNFIALGLPLNILINNAGVMFCPYQQTEDGIEMQFATNYLGHFLLTNLLLDKMKQTAKDTGIEGRIVNLSSIAHLYTYEEGIRFDTINDEDGYHEKKAYGQSKLANILHTNELSRRLQAEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFSFMIWKNVPQGAATTCYVALHPSLKGVTGKYLQDCNESPPSAHASNELLGRKLWDFSNKMINSLSKA*

>Glyma10g05030.2   sequence type=predicted peptide   gene model=Glyma10g05030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGIFSLVTGRPGLSGFGSSSTAEQVTEGIDASNLTAIITGGASGIGLETARVLAIRKVHVIIAARNMESAKEAKQLILQEDESACVDIMKLDLCSLKSVRTFVDNFIALGLPLNILINNAGVMFCPYQQTEDGIEMQFATNYLGHFLLTNLLLDKMKQTAKDTGIEGRIVNLSSIAHLYTYEEGIRFDTINDEDGYHEKKAYGQSKLANILHTNELSRRLQAEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFSFMIWKNVPQGAATTCYVALHPSLKGVTGKYLQDCNESPPSAHASNELLGRKLWDFSNKMINSLSKA*

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