Glyma10g04960 - SoyBase

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Report for Sequence Feature Glyma10g04960

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3867777
stop:	3870589
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37570	AT	Annotation by Michelle Graham. TAIR10: HSP20-like chaperones superfamily protein \| chr2:15761466-15762950 REVERSE LENGTH=494	SoyBase	E_val: 0	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_E4MYB5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-47-M12 n=1 Tax=Eutrema halophilum RepID=E4MYB5_THEHA	SoyBase	E_val: 0	ISS
UniRef100_UPI0000F35DB4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0000F35DB4 related cluster n=1 Tax=unknown RepID=UPI0000F35DB4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g04960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04960

Paralog	Evidence	Comments
Glyma13g19310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g043200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g04960

Limit To All Plant Sequences

>Glyma10g04960.4   sequence type=transcript   gene model=Glyma10g04960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATGGGAATGGATAGGAATATATGACCCAGAAGAGGAGAGAAGACAAGTTAAAATTGGAGTGTAAATATTACGAAAAAGCGAAGGCACACAAAAGCGCACCGTCACCGTAAACAAACGGTGGTCCAGGAGGGTGGTTGTATCCAGTGGAGGCTTCAACCTACGAACTTGTCCTTATAATGACACGCTCACCTACGCTTCTTCTCTCTCTCACACCCCACACCTCCTTATACACTCTTCTCCTCTATCTAACAACACCCAACAAAAATAAAAAATAAAAAAAATTAGGGTTTTCAATTTGGGGAAATAAAAATAGGGGGAAACATTCTAGAGAGAGTGTGTAGAAAATATGGTTGTCGATGATATGACGCTGTGCATCATCGTCGGCTATGGAGGTTCCTCTTCTTCTCGTTTCTCCGATGCTTATCCCAAAAGGGGTTTGATGGAGGGGAGATATAGTGGGGATTGATATGATGAAGGTGTTTATAAGGTTGTTTTGTTGAAATTGTGTTTTTGGGATGGCAATATTGTACGAACCAGCAATAAAACTCATCGACCAGATGAGCTAGCATGGGCGATTCTTGTCTTACTTCTTTGTCAATGGAGAATCATCACCCTTCCACGCTCTTGTCAATGGACTCAAGTGCATCTTCTCACGAGGAACTGGATTTGGAGATGAATCGCCAAATCATACTCACCCGTCCGCCGGATATTAATCTTCCCCTCTCCGCCGAGCGCAGCCCACCGCCACAGCCGTGGAATTCTGAGCCCTGTGATATTCTAGATGTTGGTCTTGGTACTCAAGGCTATGAGACTGAGAGTTTTCTCAATCTGCCCAAAGCTGGTAGGAAGTGCGCGAAGCGTGTTGATAGCATATGGGGTGCTTGGTTTTTCTTCAGTTTTTACTTTAAGCCTGCTTTGAATGACAAGTCCAAGGCCAAGATTGTCAGGGACAGCAACGGTGTCTCAGGGTTCGATAAGTCTGATCTGAAGCTGGATGTTTTCATGGTTCAGCACGACATGGAAAACATGTACATGTGGGTTTTCAAGGAGAGGCCGGAGAACGCGCTGGGTAAGATGCAGCTGAGGAGTTACATGAATGGGCATTCTCGCCAAGGGGAGCGCCCGTTTCCGTTTAGTGCTGACAAGGGTTTTGCTCGGTCCCACAGGATGCAACGAAAGCATTATAGAGGACTATCAAACCCTCAATGCGTGCATGGCGTTGAGGTTGTTTCCACACCCAATCTGATGACCCTGGATGAGGATGATCGAAAAAGGTGGATAGAACTCACTGGCCGAGACTTGAATTTTACAATTCCAACTGAAGCAAGTGATTTCAGTTCATGGAGAAATCTTCCCAACACGGACTTTGAGCTTGAGAGGCCACCTCCCCCAATCAAGAATGGTCCTAATGCACACCCGAAGAAGCTGCTTAATGGATCTGGACTTAACGGATCTGGTCTTAACGGATCTGGTCTTAATGGATCTGGACTTCACCTATCTAACCACAGTAATGGTGATGGGTTGGACCTCTCTCCTGTCAGCAGCAAAAAGAGGAAGGACTTTTTCCCTCATGGGAATGAAGAAGAATGTTACTTGGCTGTTAATCCTCCATCCGATCGTATTCCAGATATAGAAATGCACCCAACTGAGCCACACTGGTTGAATGACTTCAGCGGGGTGATAAAAAGTGTTTATGGACCTGTTACAGCTGCAAAAACTATTTATGAGGATGAACAAGGTTACTTGATTATTATCAGTCTGCCCTTTGTAGATCTTCCAAGTGTGAAAGTTTCATGGAGGAACACTCTGACTCACGGTATCATAAAGGTTTCTTGTATGAGCACATCTCGAAAGCCTCTCATCAAGAGACATGATAGGACATTCAAGCTTACAGATCCATCGTCAGAGCACTGCCCTCCTGGAGAGTTCGTCCGAGAAATCCCTCTTTCAACCCGAATTCCTGAAGACGCCAACATAGAAGCATACTACGATGGGCCAGGATCTGTGCTTGAGATCCTGGTGCCAAAACATCGCGTGGGACCTGAAGAGCATGAAGTCCGTGTTTGCCTCCGCCCTCATCTGGGAGGGAATGATCTTAAGTTAACTTGAGATAATAGGCACTTAAAAAAATTGTTAGGCATTCCAGTATGGTTCGTATGTCATTGTTTTTCTAACCTTGTACCATACACTGTTATTTGCAATAGAATTGTGTGTCTTATGTTTGTCTCTAGCAATTTTAGCTCACTGACTGCCCTGGTTCTTTTTGTTCCGGTGCATCTGTATGCTTCTGATTGTAAGCAGTATTGAACAGCTAATTCTCATGATTTATAAGAATTTACCAAATCATACCTTTGAAATAATTTGTTATTCGATTTCGACCTTTACATGGATTCTGATTTATTATTATCCT

Coding sequences of Glyma10g04960

Limit To All Plant Sequences

>Glyma10g04960.3   sequence type=CDS   gene model=Glyma10g04960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGATTCTTGTCTTACTTCTTTGTCAATGGAGAATCATCACCCTTCCACGCTCTTGTCAATGGACTCAAGTGCATCTTCTCACGAGGAACTGGATTTGGAGATGAATCGCCAAATCATACTCACCCGTCCGCCGGATATTAATCTTCCCCTCTCCGCCGAGCGCAGCCCACCGCCACAGCCGTGGAATTCTGAGCCCTGTGATATTCTAGATGTTGGTCTTGGTACTCAAGGCTATGAGACTGAGAGTTTTCTCAATCTGCCCAAAGCTGGTAGGAAGTGCGCGAAGCGTGTTGATAGCATATGGGGTGCTTGGTTTTTCTTCAGTTTTTACTTTAAGCCTGCTTTGAATGACAAGTCCAAGGCCAAGATTGTCAGGGACAGCAACGGTGTCTCAGGGTTCGATAAGTCTGATCTGAAGCTGGATGTTTTCATGGTTCAGCACGACATGGAAAACATGTACATGTGGGTTTTCAAGGAGAGGCCGGAGAACGCGCTGGGTAAGATGCAGCTGAGGAGTTACATGAATGGGCATTCTCGCCAAGGGGAGCGCCCGTTTCCGTTTAGTGCTGACAAGGGTTTTGCTCGGTCCCACAGGATGCAACGAAAGCATTATAGAGGACTATCAAACCCTCAATGCGTGCATGGCGTTGAGGTTGTTTCCACACCCAATCTGATGACCCTGGATGAGGATGATCGAAAAAGGTGGATAGAACTCACTGGCCGAGACTTGAATTTTACAATTCCAACTGAAGCAAGTGATTTCAGTTCATGGAGAAATCTTCCCAACACGGACTTTGAGCTTGAGAGGCCACCTCCCCCAATCAAGAATGGTCCTAATGCACACCCGAAGAAGCTGCTTAATGGATCTGGACTTAACGGATCTGGTCTTAACGGATCTGGTCTTAATGGATCTGGACTTCACCTATCTAACCACAGTAATGGTGATGGGTTGGACCTCTCTCCTGTCAGCAGCAAAAAGAGGAAGGACTTTTTCCCTCATGGGAATGAAGAAGAATGTTACTTGGCTGTTAATCCTCCATCCGATCGTATTCCAGATATAGAAATGCACCCAACTGAGCCACACTGGTTGAATGACTTCAGCGGGGTGATAAAAAGTGTTTATGGACCTGTTACAGCTGCAAAAACTATTTATGAGGATGAACAAGGTTACTTGATTATTATCAGTCTGCCCTTTGTAGATCTTCCAAGTGTGAAAGTTTCATGGAGGAACACTCTGACTCACGGTATCATAAAGGTTTCTTGTATGAGCACATCTCGAAAGCCTCTCATCAAGAGACATGATAGGACATTCAAGCTTACAGATCCATCGTCAGAGCACTGCCCTCCTGGAGAGTTCGTCCGAGAAATCCCTCTTTCAACCCGAATTCCTGAAGACGCCAACATAGAAGCATACTACGATGGGCCAGGATCTGTGCTTGAGATCCTGGTGCCAAAACATCGCGTGGGACCTGAAGAGCATGAAGTCCGTGTTTGCCTCCGCCCTCATCTGGGAGGGAATGATCTTAAGTTAACTTGA

>Glyma10g04960.4   sequence type=CDS   gene model=Glyma10g04960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGATTCTTGTCTTACTTCTTTGTCAATGGAGAATCATCACCCTTCCACGCTCTTGTCAATGGACTCAAGTGCATCTTCTCACGAGGAACTGGATTTGGAGATGAATCGCCAAATCATACTCACCCGTCCGCCGGATATTAATCTTCCCCTCTCCGCCGAGCGCAGCCCACCGCCACAGCCGTGGAATTCTGAGCCCTGTGATATTCTAGATGTTGGTCTTGGTACTCAAGGCTATGAGACTGAGAGTTTTCTCAATCTGCCCAAAGCTGGTAGGAAGTGCGCGAAGCGTGTTGATAGCATATGGGGTGCTTGGTTTTTCTTCAGTTTTTACTTTAAGCCTGCTTTGAATGACAAGTCCAAGGCCAAGATTGTCAGGGACAGCAACGGTGTCTCAGGGTTCGATAAGTCTGATCTGAAGCTGGATGTTTTCATGGTTCAGCACGACATGGAAAACATGTACATGTGGGTTTTCAAGGAGAGGCCGGAGAACGCGCTGGGTAAGATGCAGCTGAGGAGTTACATGAATGGGCATTCTCGCCAAGGGGAGCGCCCGTTTCCGTTTAGTGCTGACAAGGGTTTTGCTCGGTCCCACAGGATGCAACGAAAGCATTATAGAGGACTATCAAACCCTCAATGCGTGCATGGCGTTGAGGTTGTTTCCACACCCAATCTGATGACCCTGGATGAGGATGATCGAAAAAGGTGGATAGAACTCACTGGCCGAGACTTGAATTTTACAATTCCAACTGAAGCAAGTGATTTCAGTTCATGGAGAAATCTTCCCAACACGGACTTTGAGCTTGAGAGGCCACCTCCCCCAATCAAGAATGGTCCTAATGCACACCCGAAGAAGCTGCTTAATGGATCTGGACTTAACGGATCTGGTCTTAACGGATCTGGTCTTAATGGATCTGGACTTCACCTATCTAACCACAGTAATGGTGATGGGTTGGACCTCTCTCCTGTCAGCAGCAAAAAGAGGAAGGACTTTTTCCCTCATGGGAATGAAGAAGAATGTTACTTGGCTGTTAATCCTCCATCCGATCGTATTCCAGATATAGAAATGCACCCAACTGAGCCACACTGGTTGAATGACTTCAGCGGGGTGATAAAAAGTGTTTATGGACCTGTTACAGCTGCAAAAACTATTTATGAGGATGAACAAGGTTACTTGATTATTATCAGTCTGCCCTTTGTAGATCTTCCAAGTGTGAAAGTTTCATGGAGGAACACTCTGACTCACGGTATCATAAAGGTTTCTTGTATGAGCACATCTCGAAAGCCTCTCATCAAGAGACATGATAGGACATTCAAGCTTACAGATCCATCGTCAGAGCACTGCCCTCCTGGAGAGTTCGTCCGAGAAATCCCTCTTTCAACCCGAATTCCTGAAGACGCCAACATAGAAGCATACTACGATGGGCCAGGATCTGTGCTTGAGATCCTGGTGCCAAAACATCGCGTGGGACCTGAAGAGCATGAAGTCCGTGTTTGCCTCCGCCCTCATCTGGGAGGGAATGATCTTAAGTTAACTTGA

Predicted protein sequences of Glyma10g04960

Limit To All Plant Sequences

>Glyma10g04960.3   sequence type=predicted peptide   gene model=Glyma10g04960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDSCLTSLSMENHHPSTLLSMDSSASSHEELDLEMNRQIILTRPPDINLPLSAERSPPPQPWNSEPCDILDVGLGTQGYETESFLNLPKAGRKCAKRVDSIWGAWFFFSFYFKPALNDKSKAKIVRDSNGVSGFDKSDLKLDVFMVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSADKGFARSHRMQRKHYRGLSNPQCVHGVEVVSTPNLMTLDEDDRKRWIELTGRDLNFTIPTEASDFSSWRNLPNTDFELERPPPPIKNGPNAHPKKLLNGSGLNGSGLNGSGLNGSGLHLSNHSNGDGLDLSPVSSKKRKDFFPHGNEEECYLAVNPPSDRIPDIEMHPTEPHWLNDFSGVIKSVYGPVTAAKTIYEDEQGYLIIISLPFVDLPSVKVSWRNTLTHGIIKVSCMSTSRKPLIKRHDRTFKLTDPSSEHCPPGEFVREIPLSTRIPEDANIEAYYDGPGSVLEILVPKHRVGPEEHEVRVCLRPHLGGNDLKLT*

>Glyma10g04960.4   sequence type=predicted peptide   gene model=Glyma10g04960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDSCLTSLSMENHHPSTLLSMDSSASSHEELDLEMNRQIILTRPPDINLPLSAERSPPPQPWNSEPCDILDVGLGTQGYETESFLNLPKAGRKCAKRVDSIWGAWFFFSFYFKPALNDKSKAKIVRDSNGVSGFDKSDLKLDVFMVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSADKGFARSHRMQRKHYRGLSNPQCVHGVEVVSTPNLMTLDEDDRKRWIELTGRDLNFTIPTEASDFSSWRNLPNTDFELERPPPPIKNGPNAHPKKLLNGSGLNGSGLNGSGLNGSGLHLSNHSNGDGLDLSPVSSKKRKDFFPHGNEEECYLAVNPPSDRIPDIEMHPTEPHWLNDFSGVIKSVYGPVTAAKTIYEDEQGYLIIISLPFVDLPSVKVSWRNTLTHGIIKVSCMSTSRKPLIKRHDRTFKLTDPSSEHCPPGEFVREIPLSTRIPEDANIEAYYDGPGSVLEILVPKHRVGPEEHEVRVCLRPHLGGNDLKLT*

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