Glyma10g04770 - SoyBase

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Report for Sequence Feature Glyma10g04770

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3727863
stop:	3731995
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28730	AT	Annotation by Michelle Graham. TAIR10: Glutaredoxin family protein \| chr4:14199174-14200712 FORWARD LENGTH=174	SoyBase	E_val: 2.00E-57	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004362	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione-disulfide reductase activity	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0015035	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity	SoyBase	N/A	ISS
KOG1752	KOG	Glutaredoxin and related proteins	JGI		ISS
PTHR10168	Panther	GLUTAREDOXIN	JGI		ISS
PTHR10168:SF14	Panther	GLUTAREDOXIN, GRX	JGI		ISS
PF00462	PFAM	Glutaredoxin	JGI		ISS
UniRef100_C6SX42	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SX42_SOYBN	SoyBase	E_val: 6.00E-115	ISS
UniRef100_UPI000194AF4C	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutaredoxin n=1 Tax=Populus tremula x Populus tremuloides RepID=UPI000194AF4C	SoyBase	E_val: 7.00E-66	ISS

Expression Patterns of Glyma10g04770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04770

Paralog	Evidence	Comments
Glyma13g19120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g041900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g04770

Limit To All Plant Sequences

>Glyma10g04770.4   sequence type=transcript   gene model=Glyma10g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAAATTGGGAGTATGGGGAGTTGGAAATCTTAAGGCGTGGCATAGGCATATACACCAAAGAAGTGGAACTGAGCAGAATCAAGAAGAGAAGAATGGCATTGGCATTGGGTAACATTGTTGCTCTTCCTCTCTCAAACTTGAAACCTTCTCTAAAGTTATCTTCTTCTTCATCCTCTTGTTGTATCACCAAACTCTTCCCCATTTCCCGCATCAATGTCTCTCCCACCTCGGTATTAGTTCGAGCCTCTTCCTCATCCTCTTTCGGGTCTCGCCTCGAAGACACCATCAAGAAGACCGTAGCTGAGAACCCAGTCGTCGTTTATTCCAAAACCTGGTGCACCTATTCTTCCGAGGTCAAAATCCTCTTCAAAAAACTCGGCGTCGACCCTCTCGTCTTCGAATTAGACGAAATGGGGCCACAGTTGCAGAAGGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTGGTGGCAAACACATTGGCGGCTGTACAGATACACTGAAGCTGTACCGGAAAGGAGAACTAGAACCTTTGCTATCAGAAGCGAATGCTAAAAAAACTGAGAGCTAAGCTGTTGACTGGCATTCTAAAGGGAACCTGATCCCCTTACCAATTTGTTACTTTGTAGGTCAATGCAGTTCTCTCAATGTTATTGTTATTCACAAATGCTGGTTGAAAGAAACCAGAGCGCACTGATAACTTCAAACATTGGCGTTTAGTCAGGAACTTATGGTTACAAATATGCAGTTGAATGGTTTACAGAACTAAAGTTGCAACTTAGGATTGTACCTGGAATAATTGTATTTTATGTATTTCTATTTTTCTTCTTAGTTGGGTAATGATTCTACTTGGCCATTTGCTTTAGATGCATTGGCACCATTGTCATGCTCAAGCCAAAGTACAATTAATTCATAATACAATAAGGCACAATCTAAATCATTCTTCGAAGTTCATATGTTGTATTTCCAATCAATCAAGAATTCACTTGCTTGTAATTGCTAGTTTGAGACTGAGCCCGCAAAAAATTATTATTGGGTGGAATCAGAATTTTCCAATTTTATCAGAATTGTGAACCATAGATCTCTTAATTTTCTTGAAAGAGACACTGAAGCAACTATTGGCT

Coding sequences of Glyma10g04770

Limit To All Plant Sequences

>Glyma10g04770.3   sequence type=CDS   gene model=Glyma10g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAAATTGGGAGTATGGGGAGTTGGAAATCTTAAGGCGTGGCATAGGCATATACACCAAAGAAGTGGAACTGAGCAGAATCAAGAAGAGAAGAATGGCATTGGCATTGGGTAACATTGTTGCTCTTCCTCTCTCAAACTTGAAACCTTCTCTAAAGTTATCTTCTTCTTCATCCTCTTGTTGTATCACCAAACTCTTCCCCATTTCCCGCATCAATGTCTCTCCCACCTCGGTATTAGTTCGAGCCTCTTCCTCATCCTCTTTCGGGTCTCGCCTCGAAGACACCATCAAGAAGACCGTAGCTGAGAACCCAGTCGTCGTTTATTCCAAAACCTGGTGCACCTATTCTTCCGAGGTCAAAATCCTCTTCAAAAAACTCGGCGTCGACCCTCTCGTCTTCGAATTAGACGAAATGGGTCCTCAAGGGCCACAGTTGCAGAAGGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTGGTGGCAAACACATTGGCGGCTGTACAGATACACTGAAGCTGTACCGGAAAGGAGAACTAGAACCTTTGCTATCAGAAGCGAATGCTAAAAAAACTGAGAGCTAA

>Glyma10g04770.4   sequence type=CDS   gene model=Glyma10g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAAATTGGGAGTATGGGGAGTTGGAAATCTTAAGGCGTGGCATAGGCATATACACCAAAGAAGTGGAACTGAGCAGAATCAAGAAGAGAAGAATGGCATTGGCATTGGGTAACATTGTTGCTCTTCCTCTCTCAAACTTGAAACCTTCTCTAAAGTTATCTTCTTCTTCATCCTCTTGTTGTATCACCAAACTCTTCCCCATTTCCCGCATCAATGTCTCTCCCACCTCGGTATTAGTTCGAGCCTCTTCCTCATCCTCTTTCGGGTCTCGCCTCGAAGACACCATCAAGAAGACCGTAGCTGAGAACCCAGTCGTCGTTTATTCCAAAACCTGGTGCACCTATTCTTCCGAGGTCAAAATCCTCTTCAAAAAACTCGGCGTCGACCCTCTCGTCTTCGAATTAGACGAAATGGGGCCACAGTTGCAGAAGGTATTGGAAAGGATCACAGGGCAACACACTGTGCCAAATGTATTTATTGGTGGCAAACACATTGGCGGCTGTACAGATACACTGAAGCTGTACCGGAAAGGAGAACTAGAACCTTTGCTATCAGAAGCGAATGCTAAAAAAACTGAGAGCTAA

Predicted protein sequences of Glyma10g04770

Limit To All Plant Sequences

>Glyma10g04770.3   sequence type=predicted peptide   gene model=Glyma10g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGNWEYGELEILRRGIGIYTKEVELSRIKKRRMALALGNIVALPLSNLKPSLKLSSSSSSCCITKLFPISRINVSPTSVLVRASSSSSFGSRLEDTIKKTVAENPVVVYSKTWCTYSSEVKILFKKLGVDPLVFELDEMGPQGPQLQKVLERITGQHTVPNVFIGGKHIGGCTDTLKLYRKGELEPLLSEANAKKTES*

>Glyma10g04770.4   sequence type=predicted peptide   gene model=Glyma10g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGNWEYGELEILRRGIGIYTKEVELSRIKKRRMALALGNIVALPLSNLKPSLKLSSSSSSCCITKLFPISRINVSPTSVLVRASSSSSFGSRLEDTIKKTVAENPVVVYSKTWCTYSSEVKILFKKLGVDPLVFELDEMGPQLQKVLERITGQHTVPNVFIGGKHIGGCTDTLKLYRKGELEPLLSEANAKKTES*

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