Glyma10g04730 - SoyBase

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Report for Sequence Feature Glyma10g04730

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3650883
stop:	3652874
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74340	AT	Annotation by Michelle Graham. TAIR10: dolichol phosphate-mannose biosynthesis regulatory protein-related \| chr1:27948288-27948654 REVERSE LENGTH=80	SoyBase	E_val: 2.00E-37	ISS
GO:0009059	GO-bp	Annotation by Michelle Graham. GO Biological Process: macromolecule biosynthetic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0033185	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: dolichol-phosphate-mannose synthase complex	SoyBase	N/A	ISS
GO:0004582	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dolichyl-phosphate beta-D-mannosyltransferase activity	SoyBase	N/A	ISS
KOG3488	KOG	Dolichol phosphate-mannose regulatory protein (DPM2)	JGI		ISS
PTHR15039	Panther	DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN	JGI		ISS
PTHR15039:SF7	Panther	DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY	JGI		ISS
PF07297	PFAM	Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)	JGI		ISS
UniRef100_C6T426	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T426_SOYBN	SoyBase	E_val: 2.00E-49	ISS
UniRef100_G7LH02	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Medicago truncatula RepID=G7LH02_MEDTR	SoyBase	E_val: 5.00E-49	ISS

Expression Patterns of Glyma10g04730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g04730 not represented in the dataset	Glyma10g04730 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04730

Paralog	Evidence	Comments
Glyma13g19070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g041600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g04730

Limit To All Plant Sequences

>Glyma10g04730.3   sequence type=transcript   gene model=Glyma10g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGCTAGGAAATAAATGGCAATTTTGGGTCAAATTGTCCACTTGATTCTAGTCTTTTACTTCCAGCACCGCCTGTTTGCTTCCTGCACCTCTTGATATTTACTAATTGGACAAAATTGTCCTTCATGGGTTATGACTGGTAACCCTAGCACCCCAACCTCATTCGTTCCCCCCTGTTGCCCCAACCCTAGCACCCCCTTCCCTGGCGGCGCCACCGCAGCTGCGCCCTTCCCTGCCGGAGTGAGCCTCAAACCCCGCTGCAGCAAAGCCCTTCCCTAATTGTGCGGCGCAAATTGAGACCCCCTCAGTTCCCGCCCCCATTGTGCGACGCCGGCGACGAAGGTGAGTTTGTCGCCCCTTCCCTTCCCCAACTGTGCAATGGGTTATATTAATGAAATCTAAGGGTTCAATTGCATGTTCAGAATTTATGTTAAGCAAATCTAAGGGTAAGATCCGCCTTATTACACATATTTCTTGTTCTAAAATATTTGATTATTCCCACTGACAAGAATTCCTTGTTAAGGGAAAGTATTTGGTGGTTTGTGATGTGAATTTGAGAGCCTCCAGTGTTCAGCAAGTCAAAATTTGGGCCTCAAGGATCTTATTGTTTGCAGAGTTGGACAGACAGGGTCTGAAAAAGTGAGATTGGATGACAGACACTGTCTGATTCTAGCGTTAAATGTTTAATTTGATAATTAATTCATGTTTACACTTGATTGCATTTTAATTGACCTTATAGTTATATTCTAGGGCTGAAATCTGATTGCTCGATTTTATATAGGATCACTGGATCAGTGTTAGCTTCTGTGAGATTGCCAGATTTTGAAAGGGTAGTTGTCAGTTGTCACTATTATTTACTTGTATTAGAGTTCTTGTCATGATCTATTTGGTTCTGAATTTCAGAGATGCAATATGTGAGCACCTTGTGATGCAGATATGCATAACATGGCCCTTGTGATTGTAAACTATTTTTTAAATTTTCATCATGGATAAAATTTTAATCTTTTTAATCCAATCGTTTGCTGTCAGAAGTCTTGAGTGATTTTTTGCTCCAAAATCATCACTTTCTACATTATTTTTTTCCATCCAAACAATTCGTGAGATAAAGTCCAATTTAATTGTAAGGTCTTGACTCTTGACTAGCATGTTATATCAAATTTGGTGAATCTGAAATTCTTTTCCTTTCCAAACTTATCTTGTACCCACTGGCTTCTCAATTTGGTGTGTAAAACAGTGAAAGACACCACAGAATTCAATTATAAGGAAGTGAGAACATAAGCATTAAGCATCAAAATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGTGCACAAGTACTTCTTACCCCAAGAGTATGCCATACTGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAATGGCTAATACTGTCAATTTGTTGCACAATTTGTTCTAATTTTTGAAACAGTGAATTTATTAAATGCATTTTCGATCATTTCGTTCGAATTATTAGTAGCCACTTTTTGTTTGTCTTCGCATGGAAATACATGGATGAGTTAAGTGAGGCATGCTTCAAAATTTTGTTACATTGATTTTATAAAACGGTAACCGAA

>Glyma10g04730.4   sequence type=transcript   gene model=Glyma10g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGCTAGGAAATAAATGGCAATTTTGGGTCAAATTGTCCACTTGATTCTAGTCTTTTACTTCCAGCACCGCCTGTTTGCTTCCTGCACCTCTTGATATTTACTAATTGGACAAAATTGTCCTTCATGGGTTATGACTGGTAACCCTAGCACCCCAACCTCATTCGTTCCCCCCTGTTGCCCCAACCCTAGCACCCCCTTCCCTGGCGGCGCCACCGCAGCTGCGCCCTTCCCTGCCGGAGTGAGCCTCAAACCCCGCTGCAGCAAAGCCCTTCCCTAATTGTGCGGCGCAAATTGAGACCCCCTCAGTTCCCGCCCCCATTGTGCGACGCCGGCGACGAAGGAAGTGAGAACATAAGCATTAAGCATCAAAATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGTGCACAAGTACTTCTTACCCCAAGAGTATGCCATACTGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAATGGCTAATACTGTCAATTTGTTGCACAATTTGTTCTAATTTTTGAAACAGTGAATTTATTAAATGCATTTTCGATCATTTCGTTCGAATTATTAGTAGCCACTTTTTGTTTGTCTTCGCATGGAAATACATGGATGAGTTAAGTGAGGCATGCTTCAAAATTTTGTTACATTGATTTTATAAAACGGTAACCGAA

>Glyma10g04730.5   sequence type=transcript   gene model=Glyma10g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGACAAAATTGTCCTTCATGGGTTATGACTGGTAACCCTAGCACCCCAACCTCATTCGTTCCCCCCTGTTGCCCCAACCCTAGCACCCCCTTCCCTGGCGGCGCCACCGCAGCTGCGCCCTTCCCTGCCGGAGTGAGCCTCAAACCCCGCTGCAGCAAAGCCCTTCCCTAATTGTGCGGCGCAAATTGAGACCCCCTCAGTTCCCGCCCCCATTGTGCGACGCCGGCGACGAAGGATCACTGGATCAGTGTTAGCTTCTGTGAGATTGCCAGATTTTGAAAGGGTAGTTGTCAGTTGTCACTATTATTTACTTGTATTAGAGTTCTTGTCATGATCTATTTGGTTCTGAATTTCAGAGATGCAATATGTGAGCACCTTGTGATGCAGATATGCATAACATGGCCCTTGTGATTGTAAACTATTTTTTAAATTTTCATCATGGATAAAATTTTAATCTTTTTAATCCAATCGTTTGCTGTCAGAAGTCTTGAGTGATTTTTTGCTCCAAAATCATCACTTTCTACATTATTTTTTTCCATCCAAACAATTCGTGAGATAAAGTCCAATTTAATTGTAAGGTCTTGACTCTTGACTAGCATGTTATATCAAATTTGGTGAATCTGAAATTCTTTTCCTTTCCAAACTTATCTTGTACCCACTGGCTTCTCAATTTGGTGTGTAAAACAGTGAAAGACACCACAGAATTCAATTATAAGGAAGTGAGAACATAAGCATTAAGCATCAAAATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGTGCACAAGTACTTCTTACCCCAAGAGTATGCCATACTGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAATGGCTAATACTGTCAATTTGTTGCACAATTTGTTCTAATTTTTGAAACAGTGAATTTATTAAATGCATTTTCGATCATTTCGTTCGAATTATTAGTAGCCACTTTTTGTTTGTCTTCGCATGGAAATACATGGATGAGTTAAGTGAGG

Coding sequences of Glyma10g04730

Limit To All Plant Sequences

>Glyma10g04730.2   sequence type=CDS   gene model=Glyma10g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGTGCACAAGTACTTCTTACCCCAAGAGTATGCCATACTGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAA

>Glyma10g04730.3   sequence type=CDS   gene model=Glyma10g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGTGCACAAGTACTTCTTACCCCAAGAGTATGCCATACTGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAA

>Glyma10g04730.4   sequence type=CDS   gene model=Glyma10g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGTGCACAAGTACTTCTTACCCCAAGAGTATGCCATACTGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAA

>Glyma10g04730.5   sequence type=CDS   gene model=Glyma10g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTAGCAGACAGAGCTGTTGGATTTCTGTTATCCTTTATCAGCTTATCAATATTTACCTATTATACTTTCTGGGTTATCATCCTGCCATTTGTGGATGATGATCACTTTGTGCACAAGTACTTCTTACCCCAAGAGTATGCCATACTGATACCAGTTTCAGCTGGTGTGGCACTTCTTTGCCTCTTGTGCATATTTATTGGATTCGTGATGCTCAAATCCAAAAAGAAGAAGGCCTAA

Predicted protein sequences of Glyma10g04730

Limit To All Plant Sequences

>Glyma10g04730.2   sequence type=predicted peptide   gene model=Glyma10g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELADRAVGFLLSFISLSIFTYYTFWVIILPFVDDDHFVHKYFLPQEYAILIPVSAGVALLCLLCIFIGFVMLKSKKKKA*

>Glyma10g04730.3   sequence type=predicted peptide   gene model=Glyma10g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELADRAVGFLLSFISLSIFTYYTFWVIILPFVDDDHFVHKYFLPQEYAILIPVSAGVALLCLLCIFIGFVMLKSKKKKA*

>Glyma10g04730.4   sequence type=predicted peptide   gene model=Glyma10g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELADRAVGFLLSFISLSIFTYYTFWVIILPFVDDDHFVHKYFLPQEYAILIPVSAGVALLCLLCIFIGFVMLKSKKKKA*

>Glyma10g04730.5   sequence type=predicted peptide   gene model=Glyma10g04730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELADRAVGFLLSFISLSIFTYYTFWVIILPFVDDDHFVHKYFLPQEYAILIPVSAGVALLCLLCIFIGFVMLKSKKKKA*

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