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Report for Sequence Feature Glyma10g04710

Feature Type:gene_model
Chromosome:Gm10
Start:3637922
stop:3642995
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g04710
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28706AT Annotation by Michelle Graham. TAIR10: pfkB-like carbohydrate kinase family protein | chr4:14167805-14170619 FORWARD LENGTH=404 SoyBaseE_val: 2.00E-133ISS
GO:0006014GO-bp Annotation by Michelle Graham. GO Biological Process: D-ribose metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004747GO-mf Annotation by Michelle Graham. GO Molecular Function: ribokinase activity SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016773GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor SoyBaseN/AISS
KOG2855 KOG Ribokinase JGI ISS
PTHR10584Panther SUGAR KINASE RELATED JGI ISS
PTHR10584:SF21Panther PFKB CARBOHYDRATE KINASE-RELATED JGI ISS
PF00294PFAM pfkB family carbohydrate kinase JGI ISS
UniRef100_G7KZI2UniRef Annotation by Michelle Graham. Most informative UniRef hit: 5-dehydro-2-deoxygluconokinase n=2 Tax=Medicago truncatula RepID=G7KZI2_MEDTR SoyBaseE_val: 2.00E-136ISS
UniRef100_UPI000233D3C5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D3C5 related cluster n=1 Tax=unknown RepID=UPI000233D3C5 SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g04710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04710
ParalogEvidenceComments
Glyma13g19040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04710 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g041400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g04710
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g04710
>Glyma10g04710.2   sequence type=CDS   gene model=Glyma10g04710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATGTGCTGCCCGGTTGGGCTTAAAGCCAAGAATAATTTCCAAGGTTTCAAATGATGGTCCGGGTAAGACTATGCTGGAGGAACTAGAAGCTGAAGGGGTGGATACCTCTTTTTTTGTGGTCTCGAAGGAAGGGACTTCACCATTTAGCTACGTCATTGTTGACAACCAAACGAAAACAAGGACTTGTATATTCACTCCAGGATATCCTGAAATGGTCCCTCAAGATCTTCCACGAGCCAATTTGTTATCTGCACTGGATGGAGCAAGAATGGTCTATTTTGATGCAAGGATGCCTGACAGTGCTCTTGTCATTGCTCAAGAGGCATTTCACCAGAATATACCTATCTTAATTGATGCGGAAAGGCCTAGGGAAGGATTGAATGACCTCCTGAGTTTGGCTGATTATGTTGCCTGGACAGAGGCATCATCTATTCCAAGAGCACTAGTTTCAATTATTTTAAGATTGCCAAGACTTAAATTTGCTATTGTAACTTTGGGAAAAGATGGCTGCATAATGCTTGAGCGATGTGTGGATGATGAAGGTTCTCACATAGAAGAAATGGACGTTGAAAGCTGTTTGACAACATTAAAAGAGAGAAAGGACGATAGCACAGCCATGCCAACCTGCATAGCCTCGCCCGTTACCAAATTAAGAGCCAAGGGCATAGAAGAATCTGTGTGTGGGAGGTTATATTATGGGGCATCTGAAAAGATCCCACCATCAGAGCTTATGGATACAACTGGTGCTGGGGATGCATTTGTTGGAGCTGTTTTATATGCAATCTGTGCCAACATATCACCAGAGAAAATGTTGCCATTGGCTTCTTATGTGGCAGCTGCCAATTGTAGAGCTCTTGGAGCTCGTAGAGGTCTTCCATACAGCAATAATCCATGCCTGGCATCCTTTACTGAGTAG
Predicted protein sequences of Glyma10g04710
>Glyma10g04710.2   sequence type=predicted peptide   gene model=Glyma10g04710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTCAARLGLKPRIISKVSNDGPGKTMLEELEAEGVDTSFFVVSKEGTSPFSYVIVDNQTKTRTCIFTPGYPEMVPQDLPRANLLSALDGARMVYFDARMPDSALVIAQEAFHQNIPILIDAERPREGLNDLLSLADYVAWTEASSIPRALVSIILRLPRLKFAIVTLGKDGCIMLERCVDDEGSHIEEMDVESCLTTLKERKDDSTAMPTCIASPVTKLRAKGIEESVCGRLYYGASEKIPPSELMDTTGAGDAFVGAVLYAICANISPEKMLPLASYVAAANCRALGARRGLPYSNNPCLASFTE*






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