Glyma10g04700 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g04700

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3613266
stop:	3620679
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20300	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr2:8756475-8759845 REVERSE LENGTH=744	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010068	GO-bp	Annotation by Michelle Graham. GO Biological Process: protoderm histogenesis	SoyBase	N/A	ISS
GO:0042335	GO-bp	Annotation by Michelle Graham. GO Biological Process: cuticle development	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0048367	GO-bp	Annotation by Michelle Graham. GO Biological Process: shoot development	SoyBase	N/A	ISS
GO:0048645	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ formation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF804	Panther		JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9T5V6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5V6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C96E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C96E related cluster n=1 Tax=unknown RepID=UPI000233C96E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g04700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04700

Paralog	Evidence	Comments
Glyma13g19030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g041300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g04700

Limit To All Plant Sequences

>Glyma10g04700.3   sequence type=transcript   gene model=Glyma10g04700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAATGACTGCATGAAACTGCTTCTGATTTTGTCGTTTTGGAAACCCATTTTATTTCAGGCACTCACTCCCTCTCCCAAAACACTATATATTACTCCATCAAAAACTCATTCACTCACTGTTTCAATAAATTCTTTCATCATCATCCACCATTTTCCTCTCTCTCTCTCTCTTTTTCTCGCTTTGTTATACTTCCTGTTCTTCTTCTTCTGCATATATATACATATCGGTGTGTGTTTTTTCTCTCGCATGTTTTCTCTTCTCCGCATTTCTGGGATCTAGAAGCTTCCGCGTCATCACCGTGCTCTCTGCAATGCCGCTGCGCAGACGATAAGTACTCCCGGAGTTTTTTCCGCCTCCTCAACGCTGCGTTTTACTACTGACGATGCTTTTTTTGCCTTTGCGCACACTTGCTATGTCAATGTCGACTTCGCGTATCTTCCTCCTCGCTCTCCTTTTCTCTTTCTCAGTGAACTCGGTTTCTACGAATGTGCCATTTGCTTCAGCTGAACGAGCTAAAATGTGGTTAGTTAAACCTTCTTCTGGGCCATCTTTTGCTCCTGTGCAATCTCCATCTTATCAAGCTTGTAGCCAAATCTGTACAGATCCATTAACTGCAACTCCTTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAAGTCAGACTAGTACTGGATGCGGCTCCTTTGGCTGTTTTTCCAGTAATTGATGAGTTAGAGATTGAACTCAGTTCTGGAACATATTTGAAGCAGAGCCAGGTGAGGATAATGGGTGTCACTGCTGACAGTCAAAATCAGGGAAAAACCACAATTGATATTTACTTGGTTCCACTTGGGGAAAAATTTGACAATACCACTGCAGTTCTGTTGTCTAAACGGTTTTGGCACAACGAAGTTCCTCTTAATAGGAGCCTTTTTGGTGATTATGCCATCTTGTGTATTACTTATCCAGGTATACCATCGCCTCGGCCACCTGAAACCTTAACTGGGAGAGGTCACATGCCCAGGGAGAGTATTAATGTTCTTCCAATTACTGCAGACATGAACAGCGAGAATGAGAAAATGAATCTTAGAACAATAATCGTCATTGCTCTATCTTCTGTTGTACTCTTGTTGGTTTTGGTTGGAGCATTTTACATCATTTTGAAATGGAGGAAAATTAGGAGACCATCAAGTGCTGTTGGCCCTGCATTCACATCATGTCTAAACAAGAGATCTGGCATGGAATTTATGTTGTCAAGAAGAATTATGAGCTCAAGATCTATGTCTCTTGCGTCCGCTCTCGCTCATTCTATTCTCTCGGTTAAAACATTTTCCTTTTCTGAGCTTGAGAAAGCAACAACTAAGTTCAGTTCTCAGAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTATTGTGGGACATTGGATGATGGAAATGAAGTTGCAGTTAAGCTGCTAACAAGGGATGGTCAGAATGGAGACCGTGAATTTGTTGCAGAAGTTGAGATGCTAAGCCGCTTGCATCATCGTAATCTTGTGAAACTCATTGGTATATGCATAGAAGGGCCAAGGCGTTGCTTGGTTTATGAGCTTTTTCGCAATGGTAGTGTTGAGTCTCATTTGCATGGTGATGACAAGAAAAGGAGCCCTCTAAATTGGGAAGCACGGACAAAAATTGCCCTTGGATCTGCAAGAGGATTGGCTTATCTACACGAAGATTCTACTCCTCCTGTAATTCACCGAGATTTTAAAGCTAGCAATGTGTTGTTAGAAGATGACTTTACCCCCAAGGTTTCTGATTTTGGATTAGCAAGAGAAGCGACCGAAGGAAATAGTCATATTTCTACAAGGGTCATGGGTACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGCCATTTACTCGTTAAAAGTGATGTTTATAGTTTTGGTGTTGTGCTGCTTGAGCTTCTGACAGGCAGAAAACCAGTGGACATGTCTCAACCTCAGGGGCAGGAGAATCTTGTAACGTGGGCTCGCCCACTATTGAGAAGTAGAGAAGGTTTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGCTATGACTTTGATGACATGGCAAAGATGGCTGGTATTGCTTTCATGTGCGTACACCCGGAGGTCAATCAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATCCACAACGACACCAATGAGAGTAACAAGGAGTCTTCTGCTTGGGCCTCGGATTTTGGAGGTGAACTTGTCTTTTCTGATAGCAGTTGGTTGGATGCTGAAGAGTTAGCCCCAAGATTAGCTTATGGACAAGCATCAACCTTAATCACAATGGATTTCAATTCTGATCATCTTGAAATGATGGAAAACAGACCGTTTTCAGCTTCAAGCTTGAATGGAGATGAGATTTCTTTGCCGATCAGGCACCGGGTTAGATCAGGCCCCTTGAGAATAGCCAAGAGTAAGCTACCATTTACTAAGCTTACTCGAAGTCAGAGTGAACGTGTGGTACATCCTTCCAAGCGTGTTTGGAATGATGATGGTTACTGGGTTTAAGGTTTGATGATTCTTGTCAATGGTTACTGAGTTTTAAAGGTTTGACAATTATTGCGTTTTTAAAATGTGCAGTTTCAAAATGGCCCGAAGGGCTTATTTAGAGTTGCTGACTTGTGTAGGATATGTTCCTCAAATTTCTACATTTTTCGTGTTCGGATTGGGGAAAGACGAATTTGACATACAAGGTGGAAATTTGAAGTGTAGTGTAGGTTAGTGTTCAAACCGTAGTTACGTCCGGAGA

Coding sequences of Glyma10g04700

Limit To All Plant Sequences

>Glyma10g04700.2   sequence type=CDS   gene model=Glyma10g04700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTTTTGCCTTTGCGCACACTTGCTATGTCAATGTCGACTTCGCGTATCTTCCTCCTCGCTCTCCTTTTCTCTTTCTCAGTGAACTCGGTTTCTACGAATGTGCCATTTGCTTCAGCTGAACGAGCTAAAATGTGGTTAGTTAAACCTTCTTCTGGGCCATCTTTTGCTCCTGTGCAATCTCCATCTTATCAAGTTCCTATTGCGACTCCAAGACCACAACTTCCTCATTATCACCATCGTCACAACTGTGGGAAACCTTATGCTGCCGCTCCATCCCTTTCTAAAGACCAAGCTTGTAGCCAAATCTGTACAGATCCATTAACTGCAACTCCTTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAAGTCAGACTAGTACTGGATGCGGCTCCTTTGGCTGTTTTTCCAGTAATTGATGAGTTAGAGATTGAACTCAGTTCTGGAACATATTTGAAGCAGAGCCAGGTGAGGATAATGGGTGTCACTGCTGACAGTCAAAATCAGGGAAAAACCACAATTGATATTTACTTGGTTCCACTTGGGGAAAAATTTGACAATACCACTGCAGTTCTGTTGTCTAAACGGTTTTGGCACAACGAAGTTCCTCTTAATAGGAGCCTTTTTGGTGATTATGCCATCTTGTGTATTACTTATCCAGGTATACCATCGCCTCGGCCACCTGAAACCTTAACTGGGAGAGGTCACATGCCCAGGGAGAGTATTAATGTTCTTCCAATTACTGCAGACATGAACAGCGAGAATGAGAAAATGAATCTTAGAACAATAATCGTCATTGCTCTATCTTCTGTTGTACTCTTGTTGGTTTTGGTTGGAGCATTTTACATCATTTTGAAATGGAGGAAAATTAGGAGACCATCAAGTGCTGTTGGCCCTGCATTCACATCATGTCTAAACAAGAGATCTGGCATGGAATTTATGTTGTCAAGAAGAATTATGAGCTCAAGATCTATGTCTCTTGCGTCCGCTCTCGCTCATTCTATTCTCTCGGTTAAAACATTTTCCTTTTCTGAGCTTGAGAAAGCAACAACTAAGTTCAGTTCTCAGAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTATTGTGGGACATTGGATGATGGAAATGAAGTTGCAGTTAAGCTGCTAACAAGGGATGGTCAGAATGGAGACCGTGAATTTGTTGCAGAAGTTGAGATGCTAAGCCGCTTGCATCATCGTAATCTTGTGAAACTCATTGGTATATGCATAGAAGGGCCAAGGCGTTGCTTGGTTTATGAGCTTTTTCGCAATGGTAGTGTTGAGTCTCATTTGCATGGTGATGACAAGAAAAGGAGCCCTCTAAATTGGGAAGCACGGACAAAAATTGCCCTTGGATCTGCAAGAGGATTGGCTTATCTACACGAAGATTCTACTCCTCCTGTAATTCACCGAGATTTTAAAGCTAGCAATGTGTTGTTAGAAGATGACTTTACCCCCAAGGTTTCTGATTTTGGATTAGCAAGAGAAGCGACCGAAGGAAATAGTCATATTTCTACAAGGGTCATGGGTACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGCCATTTACTCGTTAAAAGTGATGTTTATAGTTTTGGTGTTGTGCTGCTTGAGCTTCTGACAGGCAGAAAACCAGTGGACATGTCTCAACCTCAGGGGCAGGAGAATCTTGTAACGTGGGCTCGCCCACTATTGAGAAGTAGAGAAGGTTTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGCTATGACTTTGATGACATGGCAAAGATGGCTGGTATTGCTTTCATGTGCGTACACCCGGAGGTCAATCAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATCCACAACGACACCAATGAGAGTAACAAGGAGTCTTCTGCTTGGGCCTCGGATTTTGGAGGTGAACTTGTCTTTTCTGATAGCAGTTGGTTGGATGCTGAAGAGTTAGCCCCAAGATTAGCTTATGGACAAGCATCAACCTTAATCACAATGGATTTCAATTCTGATCATCTTGAAATGATGGAAAACAGACCGTTTTCAGCTTCAAGCTTGAATGGAGATGAGATTTCTTTGCCGATCAGGCACCGGGTTAGATCAGGCCCCTTGAGAATAGCCAAGAGTAAGCTACCATTTACTAAGCTTACTCGAAGTCAGAGTGAACGTGTGGTACATCCTTCCAAGCGTGTTTGGAATGATGATGGTTACTGGGTTTAA

>Glyma10g04700.3   sequence type=CDS   gene model=Glyma10g04700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTTTTGCCTTTGCGCACACTTGCTATGTCAATGTCGACTTCGCGTATCTTCCTCCTCGCTCTCCTTTTCTCTTTCTCAGTGAACTCGGTTTCTACGAATGTGCCATTTGCTTCAGCTGAACGAGCTAAAATGTGGTTAGTTAAACCTTCTTCTGGGCCATCTTTTGCTCCTGTGCAATCTCCATCTTATCAAGCTTGTAGCCAAATCTGTACAGATCCATTAACTGCAACTCCTTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAAGTCAGACTAGTACTGGATGCGGCTCCTTTGGCTGTTTTTCCAGTAATTGATGAGTTAGAGATTGAACTCAGTTCTGGAACATATTTGAAGCAGAGCCAGGTGAGGATAATGGGTGTCACTGCTGACAGTCAAAATCAGGGAAAAACCACAATTGATATTTACTTGGTTCCACTTGGGGAAAAATTTGACAATACCACTGCAGTTCTGTTGTCTAAACGGTTTTGGCACAACGAAGTTCCTCTTAATAGGAGCCTTTTTGGTGATTATGCCATCTTGTGTATTACTTATCCAGGTATACCATCGCCTCGGCCACCTGAAACCTTAACTGGGAGAGGTCACATGCCCAGGGAGAGTATTAATGTTCTTCCAATTACTGCAGACATGAACAGCGAGAATGAGAAAATGAATCTTAGAACAATAATCGTCATTGCTCTATCTTCTGTTGTACTCTTGTTGGTTTTGGTTGGAGCATTTTACATCATTTTGAAATGGAGGAAAATTAGGAGACCATCAAGTGCTGTTGGCCCTGCATTCACATCATGTCTAAACAAGAGATCTGGCATGGAATTTATGTTGTCAAGAAGAATTATGAGCTCAAGATCTATGTCTCTTGCGTCCGCTCTCGCTCATTCTATTCTCTCGGTTAAAACATTTTCCTTTTCTGAGCTTGAGAAAGCAACAACTAAGTTCAGTTCTCAGAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTATTGTGGGACATTGGATGATGGAAATGAAGTTGCAGTTAAGCTGCTAACAAGGGATGGTCAGAATGGAGACCGTGAATTTGTTGCAGAAGTTGAGATGCTAAGCCGCTTGCATCATCGTAATCTTGTGAAACTCATTGGTATATGCATAGAAGGGCCAAGGCGTTGCTTGGTTTATGAGCTTTTTCGCAATGGTAGTGTTGAGTCTCATTTGCATGGTGATGACAAGAAAAGGAGCCCTCTAAATTGGGAAGCACGGACAAAAATTGCCCTTGGATCTGCAAGAGGATTGGCTTATCTACACGAAGATTCTACTCCTCCTGTAATTCACCGAGATTTTAAAGCTAGCAATGTGTTGTTAGAAGATGACTTTACCCCCAAGGTTTCTGATTTTGGATTAGCAAGAGAAGCGACCGAAGGAAATAGTCATATTTCTACAAGGGTCATGGGTACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGCCATTTACTCGTTAAAAGTGATGTTTATAGTTTTGGTGTTGTGCTGCTTGAGCTTCTGACAGGCAGAAAACCAGTGGACATGTCTCAACCTCAGGGGCAGGAGAATCTTGTAACGTGGGCTCGCCCACTATTGAGAAGTAGAGAAGGTTTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGCTATGACTTTGATGACATGGCAAAGATGGCTGGTATTGCTTTCATGTGCGTACACCCGGAGGTCAATCAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATCCACAACGACACCAATGAGAGTAACAAGGAGTCTTCTGCTTGGGCCTCGGATTTTGGAGGTGAACTTGTCTTTTCTGATAGCAGTTGGTTGGATGCTGAAGAGTTAGCCCCAAGATTAGCTTATGGACAAGCATCAACCTTAATCACAATGGATTTCAATTCTGATCATCTTGAAATGATGGAAAACAGACCGTTTTCAGCTTCAAGCTTGAATGGAGATGAGATTTCTTTGCCGATCAGGCACCGGGTTAGATCAGGCCCCTTGAGAATAGCCAAGAGTAAGCTACCATTTACTAAGCTTACTCGAAGTCAGAGTGAACGTGTGGTACATCCTTCCAAGCGTGTTTGGAATGATGATGGTTACTGGGTTTAA

Predicted protein sequences of Glyma10g04700

Limit To All Plant Sequences

>Glyma10g04700.2   sequence type=predicted peptide   gene model=Glyma10g04700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFLPLRTLAMSMSTSRIFLLALLFSFSVNSVSTNVPFASAERAKMWLVKPSSGPSFAPVQSPSYQVPIATPRPQLPHYHHRHNCGKPYAAAPSLSKDQACSQICTDPLTATPFGSPCGCVFPMKVRLVLDAAPLAVFPVIDELEIELSSGTYLKQSQVRIMGVTADSQNQGKTTIDIYLVPLGEKFDNTTAVLLSKRFWHNEVPLNRSLFGDYAILCITYPGIPSPRPPETLTGRGHMPRESINVLPITADMNSENEKMNLRTIIVIALSSVVLLLVLVGAFYIILKWRKIRRPSSAVGPAFTSCLNKRSGMEFMLSRRIMSSRSMSLASALAHSILSVKTFSFSELEKATTKFSSQRVLGEGGFGRVYCGTLDDGNEVAVKLLTRDGQNGDREFVAEVEMLSRLHHRNLVKLIGICIEGPRRCLVYELFRNGSVESHLHGDDKKRSPLNWEARTKIALGSARGLAYLHEDSTPPVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGNSHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSFGVVLLELLTGRKPVDMSQPQGQENLVTWARPLLRSREGLEQLVDPSLAGSYDFDDMAKMAGIAFMCVHPEVNQRPFMGEVVQALKLIHNDTNESNKESSAWASDFGGELVFSDSSWLDAEELAPRLAYGQASTLITMDFNSDHLEMMENRPFSASSLNGDEISLPIRHRVRSGPLRIAKSKLPFTKLTRSQSERVVHPSKRVWNDDGYWV*

>Glyma10g04700.3   sequence type=predicted peptide   gene model=Glyma10g04700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFLPLRTLAMSMSTSRIFLLALLFSFSVNSVSTNVPFASAERAKMWLVKPSSGPSFAPVQSPSYQACSQICTDPLTATPFGSPCGCVFPMKVRLVLDAAPLAVFPVIDELEIELSSGTYLKQSQVRIMGVTADSQNQGKTTIDIYLVPLGEKFDNTTAVLLSKRFWHNEVPLNRSLFGDYAILCITYPGIPSPRPPETLTGRGHMPRESINVLPITADMNSENEKMNLRTIIVIALSSVVLLLVLVGAFYIILKWRKIRRPSSAVGPAFTSCLNKRSGMEFMLSRRIMSSRSMSLASALAHSILSVKTFSFSELEKATTKFSSQRVLGEGGFGRVYCGTLDDGNEVAVKLLTRDGQNGDREFVAEVEMLSRLHHRNLVKLIGICIEGPRRCLVYELFRNGSVESHLHGDDKKRSPLNWEARTKIALGSARGLAYLHEDSTPPVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGNSHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSFGVVLLELLTGRKPVDMSQPQGQENLVTWARPLLRSREGLEQLVDPSLAGSYDFDDMAKMAGIAFMCVHPEVNQRPFMGEVVQALKLIHNDTNESNKESSAWASDFGGELVFSDSSWLDAEELAPRLAYGQASTLITMDFNSDHLEMMENRPFSASSLNGDEISLPIRHRVRSGPLRIAKSKLPFTKLTRSQSERVVHPSKRVWNDDGYWV*

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