Glyma10g04660 - SoyBase

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Report for Sequence Feature Glyma10g04660

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3582595
stop:	3587586
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04130	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:1073465-1075374 FORWARD LENGTH=360	SoyBase	E_val: 3.00E-172	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0051879	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Hsp90 protein binding	SoyBase	N/A	ISS
KOG0551	KOG	Hsp90 co-chaperone CNS1 (contains TPR repeats)	JGI		ISS
PTHR22904	Panther	CHAPERONE BINDING PROTEIN	JGI		ISS
PTHR22904:SF125	Panther	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN	JGI		ISS
UniRef100_D7KDB5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KDB5_ARALL	SoyBase	E_val: 2.00E-171	ISS
UniRef100_I1L8H9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8H9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g04660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04660

Paralog	Evidence	Comments
Glyma13g18990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g040900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g04660

Limit To All Plant Sequences

>Glyma10g04660.1   sequence type=CDS   gene model=Glyma10g04660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTATGGATGGAAAAGGGTTCAGAGCCATTAACCGAAAGCGAAAAAGCAGACCTTGAAGCCATTGCTGCACTCAAAGAGTCTGCTGCTTTTGAATTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTACTCTGATGCCATTGATTGCTACACAAGGGCAATTGATCAGAAAGCCTTGAGTGACTCTGAGACCTCTATTCTTTTTGCAAATAGAGCACATGTGAATTTGCTTCTAGGGAATCTTAGACGTGCTCTCACAGATTCTAATGAGGCCCTCAAGTTGTGCCCTTCAAATATTAAGGCAATTTATAGAGCTTCCAAGGCTTCTCTTTCGCTAGATATGTTGGCTGAAGCTAGAGAGTATTGCTTGAAGGGTCTTCAGTTTGATCCCAATAATGAGGACTTGAAGAAGCTTGACCGGCTGATAGGTCTCAAGATATCAGAGAAGGAGAAGCACGAGGCTGAATTCTCCAAGGCCGTTGCGGAGACAAAGGAACTTGCGTCTGTGATAGAACATAGAGGCTTGAAGATTGGAAAGGCAATGTATCGGGAACTTATTGGATTACGGAAACCTGTGTTGGATAAAAGTAATATCCTTCACTGGCCCGTTGTTCTTCTGTATGCAGAGGTTATGTCCAGCGACTTCATTGAGGATTTCTGTGAGACTGACATGTTTTCGGTTCACCTTGATATGGTATTTGCAGAAGATCAGCCGTTGTCATGGGATGTTGAAACCAACTACAAACGTGAATTTGTTGAATTATACTATGAGGCTGGTTCTGGAGTTAGTCTATCAAAGGAAAAACTTATTCATTGTCTATTAGAGGGAACTGCAGCTGCTCACAGGGAAGGTGTTGGTGATGAAGAGAAAGACACAATTGAGGATTATAAGCAACACACGGGTCCCCCTAAATGGATCAAAGTGAACGAAAGGAGAACACTCCACGATGTTCTCAAAGAGCCTAATTTCATCATTCCTGGGATCCCAGTCTTCTATGTTGTTTCAAAGCAATCCAGCTTTTATGGCAAGTTCAAAGCTGGGAAGTGGGCACCTCCAAGTATATGA

Predicted protein sequences of Glyma10g04660

Limit To All Plant Sequences

>Glyma10g04660.1   sequence type=predicted peptide   gene model=Glyma10g04660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALWMEKGSEPLTESEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDCYTRAIDQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAIYRASKASLSLDMLAEAREYCLKGLQFDPNNEDLKKLDRLIGLKISEKEKHEAEFSKAVAETKELASVIEHRGLKIGKAMYRELIGLRKPVLDKSNILHWPVVLLYAEVMSSDFIEDFCETDMFSVHLDMVFAEDQPLSWDVETNYKREFVELYYEAGSGVSLSKEKLIHCLLEGTAAAHREGVGDEEKDTIEDYKQHTGPPKWIKVNERRTLHDVLKEPNFIIPGIPVFYVVSKQSSFYGKFKAGKWAPPSI*

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