SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73840 | AT | Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein | chr1:27763937-27766328 REVERSE LENGTH=388 | SoyBase | E_val: 4.00E-83 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006470 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035194 | GO-bp | Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR23139 | Panther | RNA-BINDING PROTEIN | JGI | ISS | |
| PTHR23139:SF13 | Panther | CLEAVAGE STIMULATION FACTOR 64 | JGI | ISS | |
| UniRef100_C6T790 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T790_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O81698 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Proline-rich protein n=1 Tax=Glycine max RepID=O81698_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g04650 not represented in the dataset |
Glyma10g04650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g18981 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g040800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g04650.1 sequence type=CDS gene model=Glyma10g04650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGGAAAACAGGTCGGCGGCGAGGGCCTATCGGTTAACCTGGCTGGAATGTCGAAGAACCAGCTCTACGATATCATGTCTCAGATGAAGAGTTTGATCGAACAGAACCAGCAACAGGCCAAGCAGATCCTAATCCAAAACCCCATGTTAACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTGCAAGCACCTCAAACGGTTCCAAAAGTTCAGCCAATGGTTCCGCAGAACAATCTGCAGTCAGTACAACCAACACAAAAACCAAATATTCAGCCTGCTCCATTATTGCCTGGGCTTGGTGGTGCACAGGATCAAGCAGGTGTATCTCAAACCCAGATTCCTCTGAGGAAACACCAGAACCAACCTTCAGTGCCAGTTTCATCTGCTGTTCCTGCATTGAGTCATCAATCTCAGCCCATGGCTGCACAATCTTTGACAATGCCACAACAGCCTAAAGGACATCTGGCTCCCCAAGTGGCTCTAGCGTCTCTTCCACAATCATCACAACTTCCAAACATACCTTCGCCTTCTCTTCATTCATTGTCACAACCTCTTCATCCAACTCAAATGTCAACTGCTTCCAGTCACTTACAGCATCCATTGCTGACACCTGGATTTCCACATATGCCTCTGCCACCACAGATTAGACAACCTGCAATGCCAACCTTCCATCCTCAATATCCCCCTCAAATGGGTGCAAACTTAGGTTTTCAACATGCTGGTGCTTCTCACAATCTTTCGCAGTCCATGTTTCATCCAGGCACAAAACCTCCTGCTAGTGTTGGATCCACATTCCCACAGGGGCTTCCAAGTCAAAAATCATCTCAGCCACCTTATCAGGTTGGAAATGTTCCTTCAGGGCCCGAGTTTGGCAATCAAGCTGGAAATGCTATGCAAGTGGACAGAGGGGCTTCTTTGATGCCCGGTCCCTCAGATAACCTAGCACATCTTTCTGGTCCTCCTGGACCTCCATATGTAGTTTCTGGTCAGATGGGTGCTGCTAATCAGCCTCTTCGGCCTCCTGCGTTGACACCAGATATGGAGAAGGCACTGCTTCAACAGGTCATGAGCCTCACACCGGAGCAGATAAATCTCCTTCCTCCAGAACAACGAAATCAAGTGCTGCAGCTACAACAGATGTTGCGTCAATGA
>Glyma10g04650.1 sequence type=predicted peptide gene model=Glyma10g04650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGKQVGGEGLSVNLAGMSKNQLYDIMSQMKSLIEQNQQQAKQILIQNPMLTKALFQAQIMLGMVQAPQTVPKVQPMVPQNNLQSVQPTQKPNIQPAPLLPGLGGAQDQAGVSQTQIPLRKHQNQPSVPVSSAVPALSHQSQPMAAQSLTMPQQPKGHLAPQVALASLPQSSQLPNIPSPSLHSLSQPLHPTQMSTASSHLQHPLLTPGFPHMPLPPQIRQPAMPTFHPQYPPQMGANLGFQHAGASHNLSQSMFHPGTKPPASVGSTFPQGLPSQKSSQPPYQVGNVPSGPEFGNQAGNAMQVDRGASLMPGPSDNLAHLSGPPGPPYVVSGQMGAANQPLRPPALTPDMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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