Glyma10g04580 - SoyBase

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Report for Sequence Feature Glyma10g04580

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3525878
stop:	3533235
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43990	AT	Annotation by Michelle Graham. TAIR10: SET-domain containing protein lysine methyltransferase family protein \| chr5:17698523-17701733 FORWARD LENGTH=717	SoyBase	E_val: 1.00E-149	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0016246	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA interference	SoyBase	N/A	ISS
GO:0016570	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone modification	SoyBase	N/A	ISS
GO:0031047	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0048449	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ formation	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0018024	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone-lysine N-methyltransferase activity	SoyBase	N/A	ISS
KOG1082	KOG	Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing	JGI		ISS
PTHR22884	Panther	SET DOMAIN PROTEINS	JGI		ISS
PTHR22884:SF23	Panther	SET DOMAIN PROTEIN	JGI		ISS
PF00856	PFAM	SET domain	JGI		ISS
PF05033	PFAM	Pre-SET motif	JGI		ISS
PF10440	PFAM	WIYLD domain	JGI		ISS
UniRef100_B9SKN2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9SKN2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C969	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C969 related cluster n=1 Tax=unknown RepID=UPI000233C969	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g04580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04580

Paralog	Evidence	Comments
Glyma13g18851	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g040100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g04580

Limit To All Plant Sequences

>Glyma10g04580.2   sequence type=CDS   gene model=Glyma10g04580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCCAACGCCGAGTCAAAAAGAAAGAGCACTTGCGGCATGTCGTGCTATGTCAAGTCTTGGAATTGATGATTTGAGAGTGAAATCAGTGTTAAAGAAACTCCTCAAAGTGTATGAAAAAAATTGGGAACTTATTGAGGCAGAGAACTATAGAGTTCTAGCAGATGCTATATTTGAGGATGACGATAAAATGGTGCCCGAACTGAAAAAGAAAAGCCAGGCAGCCAATGTACATAACGCTCGTCATTCTTTGTCTTCTTCCCTTCAAAACAACCAGGAAGCAGAGACAGAGTGTGAAGAGGCTCAGATGCATATTGAAACAGCCCGACCTTTGAAAAGGTTGCGATTACAAGGCCAAGAGAGTCAGCCTTTGCATCCTCTGGCTAACAGTGCCCCCAGCCCTCCATCAAAAAGACTTAAATTAGATGATAATGCATCTTCTAGGAAGAAGCTTCAAAACAAACCAGTGTCTTCTGATGGGAATCCAAGGATTGAAGCATGTTCACTTCCACCACAAGATTGCATTGTTGATAAGGGAAAGCAACCTGCATCACCCGAAGTTTATCATAGAGGAAGAAGACTTACATCTGAAAGAGTATCCCAATCTATACCGTCTAGAGAGCCAACAGTTGAACCTGGGAGATTTCTATTGCCAAACAACCAAATGCCCCATACTCAGACACCAATCATACCCAAGGACGAGCCTATTGATGAAATGCCTGATTACGAGATGCCCATTGCAGTGATTCCTCCTGAATCATCAAGTGTAAGGAACTGGTCAATTAAGAATGGTGTAGCTGGAAAACACAGTGGTCGTGCTACTGTGGCATCATCACAAAGCAGAGATGGAGTTGTAGATGAAGATGTTATTCGTACCTCAAATGGAGAAAGGACTTGTGATGTAGAGATAGCCTCATCAACTCTTGGAGAGGTAAAACTTTCTTTGAGCTGCAGCCCAGCTCTTTGGGGATCAGATTTTCATATGCCTAGTCAAGATCAACTTATAGAAATGATGGAGGATAAATGTCTGCAATCATATAAAATCACTGACCCAAATTTCTCTGTGAAGAATCTGTTGAGAGATATATGTGATTGCATGTTGGAATTCAGAAATGATAAGTCACAAGAGGGTTCTACGATAAGGTCCAGTGTTGATGTGTTGAAGGAACCACATGCACCTGACACACTGAGTGTGGTAGGAAATAAAGATTTGGACAGATCTTCTCACTTTTCAAACGGATCCATCAATGTTAAGTCTTCTGATGCTTTGGTTTCTCCCCGAAGTATCCTTCCTCTAGCCCACCCGAATGGTCTGAGTGATGCTGTACTGGTTTCCAAGATGGACGGAACAAATGATTTTTTGCAAAGTAATGTCAGAAAGGATCTGGAAGATCCTATGTCTCCAAATTCACAAAGTTTAGTGTTTGTTCCACAGCATCAGCTTACAGTTGGTGATATAAGGTCTTTTCATGATGCTAATGACCTTACAAAAGGAGAAGAAAATGTTGAAATTCCATGGGTGAACGAAACTACTAGTGATTTCGCACCATCTTTTAACTACATACCCCAAAACCTTGTGTTCCAAGATGCTTATGTTAATATTTCTCTATCACGTATTGGTGGTGAGGATTGTTGTTCAACTTGTATGGGCAATTGTGTCTTGTCTACTACCTGTGCTTGTGCAAATAAAACTGGTGGTAAATTTGCATACAATACTGAGGGCCTACTGAAGGAAGAATTCTTGGAAGAGTGCATTGCAATCAGTCGCAACCCTCAACAACATTTCTACTATTGCAAAAATTGTCCACTTGAAAGATCCAAGAATGATGGTTGTTTAGAACCGTGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGTTGTGGGAAACAGTGTGGAAATCGGGTTATCCAGCGAGGAATAACTTACAATTTGCAGGCATTTTTTACTTCAGAAGGAAAAGGATGGGGTCTTCGTACCTTAGAGGACCTGCCAAAAGGTGCATTTGTGTGCGAGTTTGTTGGAGAAATATTATCCATTAAAGAGTTGCATGAGAGGAGCATGAAATGCACTGAAAATGGGAAATATACATACCCAGTTCTACTGGATGCAAATTGGGATTCAGGATATGTGAAGGACGAAGAAGCTTTATGCTTGGATGCAGCTTCTTTTGGAAACACTGCTAGGTTTATCAATCACAGATGTTCTGATGCAAACTTGATTGAGATCCCTGTTGAAGTTGAGGATCCTGGTCATTATTACTATCACTTTGCCTTTTTCACTTCAAGAAAAATAGCAGCGCAGGAGGAGCTAACATGGGATTATGGCATTGACTTTGATGACCATGATCATCCTGTCAAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAACATGAAGAGATCAAGCAGATCTTTTAGATCTTCGTCAATTGCAGGATGA

Predicted protein sequences of Glyma10g04580

Limit To All Plant Sequences

>Glyma10g04580.2   sequence type=predicted peptide   gene model=Glyma10g04580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPTPSQKERALAACRAMSSLGIDDLRVKSVLKKLLKVYEKNWELIEAENYRVLADAIFEDDDKMVPELKKKSQAANVHNARHSLSSSLQNNQEAETECEEAQMHIETARPLKRLRLQGQESQPLHPLANSAPSPPSKRLKLDDNASSRKKLQNKPVSSDGNPRIEACSLPPQDCIVDKGKQPASPEVYHRGRRLTSERVSQSIPSREPTVEPGRFLLPNNQMPHTQTPIIPKDEPIDEMPDYEMPIAVIPPESSSVRNWSIKNGVAGKHSGRATVASSQSRDGVVDEDVIRTSNGERTCDVEIASSTLGEVKLSLSCSPALWGSDFHMPSQDQLIEMMEDKCLQSYKITDPNFSVKNLLRDICDCMLEFRNDKSQEGSTIRSSVDVLKEPHAPDTLSVVGNKDLDRSSHFSNGSINVKSSDALVSPRSILPLAHPNGLSDAVLVSKMDGTNDFLQSNVRKDLEDPMSPNSQSLVFVPQHQLTVGDIRSFHDANDLTKGEENVEIPWVNETTSDFAPSFNYIPQNLVFQDAYVNISLSRIGGEDCCSTCMGNCVLSTTCACANKTGGKFAYNTEGLLKEEFLEECIAISRNPQQHFYYCKNCPLERSKNDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITYNLQAFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILSIKELHERSMKCTENGKYTYPVLLDANWDSGYVKDEEALCLDAASFGNTARFINHRCSDANLIEIPVEVEDPGHYYYHFAFFTSRKIAAQEELTWDYGIDFDDHDHPVKLFQCRCGSKFCRNMKRSSRSFRSSSIAG*

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