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Report for Sequence Feature Glyma10g04480

Feature Type:gene_model
Chromosome:Gm10
Start:3443224
stop:3448029
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g04480
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G20420AT Annotation by Michelle Graham. TAIR10: ATP citrate lyase (ACL) family protein | chr2:8805574-8807858 FORWARD LENGTH=421 SoyBaseE_val: 0ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0019243GO-bp Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004776GO-mf Annotation by Michelle Graham. GO Molecular Function: succinate-CoA ligase (GDP-forming) activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016874GO-mf Annotation by Michelle Graham. GO Molecular Function: ligase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG2799 KOG Succinyl-CoA synthetase, beta subunit JGI ISS
PTHR11815Panther SUCCINYL-COA SYNTHETASE BETA CHAIN JGI ISS
PF00549PFAM CoA-ligase JGI ISS
PF08442PFAM ATP-grasp domain JGI ISS
UniRef100_A5HIG2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Succinyl-CoA ligase beta subunit n=1 Tax=Caragana jubata RepID=A5HIG2_9FABA SoyBaseE_val: 0ISS
UniRef100_I1L8G3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1L8G3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g04480
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04480
ParalogEvidenceComments
Glyma13g18730 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04480 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g039000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g04480
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g04480
>Glyma10g04480.1   sequence type=CDS   gene model=Glyma10g04480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAGAGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCGGTCGCCGGAAAATGGCAGCACAATCAACTCCGCCGCCTCAACATCCACGAGTACCAGGGTGCTGAATTGATGAGCAAACACGGAGTCAACGTTCCGAGAGGCGTGGCTGTTTCCTCTGTTGAAGAGGCCAGAAAGGTCATCAAGGACCTTTTCCCTAATGAAAATGAGTTGGTGGTTAAGAGTCAAATTTTAGCCGGCGGACGAGGTTTGGGAACTTTCAAAAGCGGCCTTAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTGAAGACATAGCTGGGAAGATGCTTGGACAGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGGTTTACTTGTGTGAAAAGCTGTCACTTGTAAATGAGATGTACTTTGCTATAACACTGGATCGTACGAGTGCTGGTCCAATTATAATTGCTTGTAGTAAGGGAGGAACCAGCATTGAAGACCTTGCAGAGAAATTTCCGGACATGATTATAAAGGTACCTGTTGATGTTTTTGAAGGTATTACTGATGAAGGTGCTGCAAAGGTTGTTGATGGTTTGGCTCTCAAAGTGGCTGATAGAAATAAGTCGATTGAACAAGTGAAGAATTTGTATAAACTTTTTGTTGATTGTGACTGCACTCTTTTGGAAATCAATCCCATAGCGGAGACAGCTGATAACCAATTGGTGGCTGCTGATGCTAAGTTGAATTTTGATGATAATGCTGCATATCGCCAGAAAGAGATATTTTCTCTCCGTGATACAACACAAGAGGACCCTCGAGAGGTGACTGCTGCAAAGGCAGATTTAAATTATATTGGGTTAGATGGAGAAATTGGCTGCATGGTGAATGGAGCAGGGTTAGCAATGGCCACAATGGATATAATTAAATTGCATGGGGGTACTCCTGCCAATTTTCTGGATGTAGGTGGCAATGCCTCTGAAAACCAGGTTGTTGAGGCATTTAAAATATTGACTGCTGATGACAAAGTGAAGGCAATTTTGGTTAACATTTTTGGTGGTATAATGAAGTGTGATGTTATAGCAAGTGGAATAGTGAATGCTGCAAAAGAGGTTGCACTGAAAGTACCAGTTGTAGTTCGTCTGGAAGGCACCAATGTTGATCAAGGAAAAAGAATATTGAAGGAAAGTGGTATGGCATTAATAACGGCTGAAGATTTAGATGATGCAGCTCAGAAAGCAGTGAAAGCTGCTTACAAATGA
Predicted protein sequences of Glyma10g04480
>Glyma10g04480.1   sequence type=predicted peptide   gene model=Glyma10g04480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRGLLNKLVSRSLSVAGKWQHNQLRRLNIHEYQGAELMSKHGVNVPRGVAVSSVEEARKVIKDLFPNENELVVKSQILAGGRGLGTFKSGLKGGVHIVKTDQVEDIAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAITLDRTSAGPIIIACSKGGTSIEDLAEKFPDMIIKVPVDVFEGITDEGAAKVVDGLALKVADRNKSIEQVKNLYKLFVDCDCTLLEINPIAETADNQLVAADAKLNFDDNAAYRQKEIFSLRDTTQEDPREVTAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASENQVVEAFKILTADDKVKAILVNIFGGIMKCDVIASGIVNAAKEVALKVPVVVRLEGTNVDQGKRILKESGMALITAEDLDDAAQKAVKAAYK*






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