Glyma10g04460 - SoyBase

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Report for Sequence Feature Glyma10g04460

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3437231
stop:	3439512
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33460	AT	Annotation by Michelle Graham. TAIR10: ROP-interactive CRIB motif-containing protein 1 \| chr2:14174590-14175561 REVERSE LENGTH=224	SoyBase	E_val: 2.00E-21	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0010215	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose microfibril organization	SoyBase	N/A	ISS
GO:0031122	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoplasmic microtubule organization	SoyBase	N/A	ISS
GO:0010005	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule, transverse to long axis	SoyBase	N/A	ISS
GO:0016324	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF00786	PFAM	P21-Rho-binding domain	JGI		ISS
UniRef100_F4IVV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ROP-interactive CRIB motif-containing protein 1 n=1 Tax=Arabidopsis thaliana RepID=F4IVV0_ARATH	SoyBase	E_val: 9.00E-19	ISS
UniRef100_I1L8G2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8G2_SOYBN	SoyBase	E_val: 3.00E-146	ISS

Expression Patterns of Glyma10g04460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04460

Paralog	Evidence	Comments
Glyma13g18720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g038900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g04460

Limit To All Plant Sequences

>Glyma10g04460.2   sequence type=transcript   gene model=Glyma10g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCAACAATTCAAGTAAATCAAAGATGGGCATTCTTTAAACAGGACATGTTAGTTAGATTCAACCCTTTTCTCACCACTGCCACCTTCATTACACATTTGTCAAAAACTGCCCCAAGTTTTTGAACCATTATTATTCTCTTTCTTCAATTGCCAAAAGAAGCTGAAAACCATATTTGCACGCACTAAGAAGAAACCAAATACACGAATTCCTCTAATCATCCTTTGATGAGTTCTCTCAGGACTATTTGTTCAATTCCAATGTACACATATTGTTGAATGTTCAACAAAGAAAATTAACTTGTTTCGTTGTGGGTCTCAAAGTCATTGTTGGATTCTCATCTTCCGGTTTTACATAAGGTTATTTAATTATAAGTACGACTTTGTAGTTCGTCAAAAGAGAATTCAAACACATCGCATTTGTTGAGTTGAGCATGTCCGGCAACAAGGTGAAGGGCATTCTTAAAGGCTTTAGATACCTAACTCAAATATTTGAGAATGAAAAAGAACAAGAAATACAGATTGGATTTCCCACGGATGTAGAGCACGTGGCTCACATAGGGTCTATGCGGGATGAATCCTCTGTAAACTTACCCAGCTGGCCTTTGGGGGGCTTGTTGTGACTGTTATTTTCAGATGAAAGAGTTTAAAACTGCTCCAGGATTTTCATCAGTACCTCTAGATGTTCAAAATAAAGGACAGCACAGTGCCAAATGGGTCTCTGAAGAGTCAAGGAGAAGAAATACTCGGGATTTGGGCAAGGCATCTAAAAGGCAGTCAACGGGTGGAGTAAGTGGTTCTCCATCGTGGGAAAAGTCAAACAAACCAAGAAAGTCATCGAACAAGCCCAAAGAAGAATCCATCCCGACCCGAATACCCGTATCCATGGATCACCCGCCTCCAACCCTAACAGTACCCGATATTCCTAAAAAGTCTCGTCGCCATAAGCCAAAGGAGAATTCTAGTGGCAGGTCATCCAAATTGAGATCCAAAGCCCAACCCACTTCAGAATCCGGATCCCCGATCCAATCCAAGCCTAGGAACAAACCAATGCCCTGTGAAGAAAATGATCAAGATATCTTGAAATAATCTTGCTCTTATTTCATCCTATTAGTTAGAGTGTTGTATAGATCATTCTTCAAACTAGAACACTTCCTTCCTTTTCTACCCGATTTTCAATATTTATAATTTATGTCATTTTCTTAATTTGATAATCTTTTTTGTTCTTTTATATATCAGTGCAACTTGTTCAT

Coding sequences of Glyma10g04460

Limit To All Plant Sequences

>Glyma10g04460.1   sequence type=CDS   gene model=Glyma10g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGGCAACAAGGTGAAGGGCATTCTTAAAGGCTTTAGATACCTAACTCAAATATTTGAGAATGAAAAAGAACAAGAAATACAGATTGGATTTCCCACGGATGTAGAGCACGTGGCTCACATAGGGTCTATGCGGGATGAATCCTCTGTAAACTTACCCAGCTGGATGAAAGAGTTTAAAACTGCTCCAGGATTTTCATCAGTACCTCTAGATGTTCAAAATAAAGGACAGCACAGTGCCAAATGGGTCTCTGAAGAGTCAAGGAGAAGAAATACTCGGGATTTGGGCAAGGCATCTAAAAGGCAGTCAACGGGTGGAGTAAGTGGTTCTCCATCGTGGGAAAAGTCAAACAAACCAAGAAAGTCATCGAACAAGCCCAAAGAAGAATCCATCCCGACCCGAATACCCGTATCCATGGATCACCCGCCTCCAACCCTAACAGTACCCGATATTCCTAAAAAGTCTCGTCGCCATAAGCCAAAGGAGAATTCTAGTGGCAGGTCATCCAAATTGAGATCCAAAGCCCAACCCACTTCAGAATCCGGATCCCCGATCCAATCCAAGCCTAGGAACAAACCAATGCCCTGTGAAGAAAATGATCAAGATATCTTGAAATAA

>Glyma10g04460.2   sequence type=CDS   gene model=Glyma10g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAGTTTAAAACTGCTCCAGGATTTTCATCAGTACCTCTAGATGTTCAAAATAAAGGACAGCACAGTGCCAAATGGGTCTCTGAAGAGTCAAGGAGAAGAAATACTCGGGATTTGGGCAAGGCATCTAAAAGGCAGTCAACGGGTGGAGTAAGTGGTTCTCCATCGTGGGAAAAGTCAAACAAACCAAGAAAGTCATCGAACAAGCCCAAAGAAGAATCCATCCCGACCCGAATACCCGTATCCATGGATCACCCGCCTCCAACCCTAACAGTACCCGATATTCCTAAAAAGTCTCGTCGCCATAAGCCAAAGGAGAATTCTAGTGGCAGGTCATCCAAATTGAGATCCAAAGCCCAACCCACTTCAGAATCCGGATCCCCGATCCAATCCAAGCCTAGGAACAAACCAATGCCCTGTGAAGAAAATGATCAAGATATCTTGAAATAA

Predicted protein sequences of Glyma10g04460

Limit To All Plant Sequences

>Glyma10g04460.1   sequence type=predicted peptide   gene model=Glyma10g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGNKVKGILKGFRYLTQIFENEKEQEIQIGFPTDVEHVAHIGSMRDESSVNLPSWMKEFKTAPGFSSVPLDVQNKGQHSAKWVSEESRRRNTRDLGKASKRQSTGGVSGSPSWEKSNKPRKSSNKPKEESIPTRIPVSMDHPPPTLTVPDIPKKSRRHKPKENSSGRSSKLRSKAQPTSESGSPIQSKPRNKPMPCEENDQDILK*

>Glyma10g04460.2   sequence type=predicted peptide   gene model=Glyma10g04460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEFKTAPGFSSVPLDVQNKGQHSAKWVSEESRRRNTRDLGKASKRQSTGGVSGSPSWEKSNKPRKSSNKPKEESIPTRIPVSMDHPPPTLTVPDIPKKSRRHKPKENSSGRSSKLRSKAQPTSESGSPIQSKPRNKPMPCEENDQDILK*

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