SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G28560 | AT | Annotation by Michelle Graham. TAIR10: ROP-interactive CRIB motif-containing protein 7 | chr4:14116015-14117367 REVERSE LENGTH=450 | SoyBase | E_val: 2.00E-131 | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016324 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| UniRef100_B9SV17 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9SV17_RICCO | SoyBase | E_val: 2.00E-131 | ISS |
| UniRef100_UPI000233C968 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C968 related cluster n=1 Tax=unknown RepID=UPI000233C968 | SoyBase | E_val: 0 | ISS |
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Glyma10g04450 not represented in the dataset |
Glyma10g04450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g18711 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g038800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g04450.2 sequence type=CDS gene model=Glyma10g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTGGTAGTCATGTCTTATGGACGATGATGTTTTCTTTTGTTATCGTGACAAGCACGTTTTTTTCACTCTCCCACCAGCAGCAACAACAACCACCTTTGGATCCCTCCGAACAAAATGCACTCTACGATGTTCTTCACTCTCTCAACCCCACCATTCCCTGGCGCAACCTCTTCCCCGACGATCTCTGTCTCTCTGCTCCACACGGCGTCGTTTGCGACTTTCCTACTCATCAAAACGAAACTCCTCACGTCGTTGAACTCAGCTTCGGCTACGTCTCCGACGAAACCCCAAACCCACCTTGTTCCCTTAACGCCACACTCAATAACCCTCTAATCTCCACCTCTTTCCCTTACCTCCGCAAACTCTTCTTCTACAATTGCTTCAACAAAACCCTTCCTCCTCCTCTTTCTCTCCCTTCTTCACTTGAAGAACTTGTTTTCATTAACAACCCTTCTTTCGTTGCAGCTCTAGATACCTTTCTTCAAAACCTCACTTCTCTCAGGAGACTCATTTTGATCGGAAACTCCTTTCACGGTGAGGTTCCGTTTTACATTGGTGGTTTTCTTAATCTGGAAGAGGTTACTTTGTCTAGAAACAACCTTAGTGGTAAAATCCCCGCGAGTTTGGGGTTGCTGAGGAAGAATCTCAAGGTTCTTGATCTCAGTGGGAATAACCTCTCACAATGTCTCCCTCACTCGCTTGGTAATCTTTCCCAGCTTTTGAAGCTCGACTTGAGCTTCAACGCGTTTGGTTGCAGAATCCCTGAGAACTTGAGAGGGTTGCAAAGTTTGCATTTTTTGGATTTAAGCTTCAACCGATTCGGTAATTTTGGGGTGCCTTTATTCTTGAGGGAGATTCCCACGTTGAAGGAAGTGTACCTGAGTGGGAATTTTCTCTCTGGGGTGATTCCTGATATATGGGAAAATCTCGGGGGTGTTGAAAAATTAGGTTTTTCAGAGATGGGTCTGGTTGGGAATATCCCTGCTTCAATGGGGGTTCATTTGAAAAAACTAAGTTATATTGGGCTTGATAACAATAACCTTGATGGGTCTGTGCCTTATGGGCTTTTGGAGTATGCTAGTGAGATCAATTTGGAGAACAACAAATTGAGTGGGAGAGTGGAATTCTCAACAACCAAAGTAGGACAAAAGGTGAAGCTTGCAGGGAACAAAGGACTGTGTGTGGACAACAAAGTTGTTGGTGGTGGTGTCTTGGGTCAACAACAACTGAAAGCCTGCAAGAAAACTGATGTTCCTGATGCTGTCGTTTTCAGTGGGACTTCTTCTCTGCTGCTGCGTTTTTATTCTCTCGCTGGGGTGGTGGTTGTTGTCTTCTTTGTCTTCATCTTCACGGGATTTTGA
>Glyma10g04450.2 sequence type=predicted peptide gene model=Glyma10g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCGSHVLWTMMFSFVIVTSTFFSLSHQQQQQPPLDPSEQNALYDVLHSLNPTIPWRNLFPDDLCLSAPHGVVCDFPTHQNETPHVVELSFGYVSDETPNPPCSLNATLNNPLISTSFPYLRKLFFYNCFNKTLPPPLSLPSSLEELVFINNPSFVAALDTFLQNLTSLRRLILIGNSFHGEVPFYIGGFLNLEEVTLSRNNLSGKIPASLGLLRKNLKVLDLSGNNLSQCLPHSLGNLSQLLKLDLSFNAFGCRIPENLRGLQSLHFLDLSFNRFGNFGVPLFLREIPTLKEVYLSGNFLSGVIPDIWENLGGVEKLGFSEMGLVGNIPASMGVHLKKLSYIGLDNNNLDGSVPYGLLEYASEINLENNKLSGRVEFSTTKVGQKVKLAGNKGLCVDNKVVGGGVLGQQQLKACKKTDVPDAVVFSGTSSLLLRFYSLAGVVVVVFFVFIFTGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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