Glyma10g04440 - SoyBase

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Report for Sequence Feature Glyma10g04440

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3425870
stop:	3432231
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G28550	AT	Annotation by Michelle Graham. TAIR10: Ypt/Rab-GAP domain of gyp1p superfamily protein \| chr4:14111204-14113468 FORWARD LENGTH=424	SoyBase	E_val: 0	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG2197	KOG	Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins	JGI		ISS
KOG4567	KOG	GTPase-activating protein	JGI		ISS
PTHR22957	Panther	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	JGI		ISS
PTHR22957:SF30	Panther	GTPASE ACTIVATING PROTEIN-RELATED	JGI		ISS
PF00566	PFAM	TBC domain	JGI		ISS
UniRef100_D7MDB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RabGAP/TBC domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MDB2_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C967	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C967 related cluster n=1 Tax=unknown RepID=UPI000233C967	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g04440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04440

Paralog	Evidence	Comments
Glyma13g18700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g038700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g04440

Limit To All Plant Sequences

>Glyma10g04440.2   sequence type=transcript   gene model=Glyma10g04440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAATTTTGAACATAATAACGCAAGCACGAATCTTAGTTGGGTGGATGGTGGGAGGAACAGAAATGATCCAAATATACCTCGATGATATTAATGAATTTGTGGCAACCAAGATTAAAAAATGTCCAATTCCAAATAACCGTTGGAAACAGAACATGCATATATATAGTTAATAGTCTTCTGAATCTGATATCTTTCCTTACTTCCTCGTCAACAATCATTGTTCATTCGGCGAATTATCCTATTCAACCACTCATTGCCTTTCGATCTCTCTCTCTCTCCTGCGACACAACATCTCATTCTAAATTCCCTTCAATTTCATCTCTCACACATCCATACCTCTTCAAACCATAAAAAAAAATTAAAATGATTCACCTTTTCGCGTTAATAAGTCACTTCCCAAATCGTCAAGCTATTGATGGTGTGATGAGTCTCAACTCTCTAGTAAGGAGCTTGTTGGATTGAAAAAGGAACTTGTGTGGGTTAGCAGATGGTTGGTTGTGAGGGACTGTGGGGGGTTCTTATGAAGAGTTCTGGAACTACTGAGTTGAATACCTTTTACCCCATTAAAGCAGAATGCCAAGCTGATGTTCCAGCCACTCGATTTAAACCAAGGGCTGGCAAAACTCTAAGTCAAAGAAGATGGCAGGCATCATTCTCCCAAGATGGTCACTTGGATATTGCAAAAGTGCTAAGACGAATACAGAGAGGGGGTGTCCATCCTTCAATCAAGGGGGAAGTGTGGGAGTTCTTGCTAGGTTGCTATGATCCTAACAGTACACTTGAAGAACGGAATGAGCTCAAGCAACGCAGGAGGGGGCAGTATGATATGTGGAAAGCTGAATGTCAAAAGATGGTCCCAGTCATTGGTAGTGGAAAATTTATTACAACACCCCTCATTGATGATGAAGGCCAGCCAATAGATCCTTCTATGGTAGGCGTCCAGACTTCAGATAAGAAAGTTGTGCAGTGGATGCAATTATTACATCAGATTGGTCTGGATGTTCATCGAACAGATCGAGCACTTGAATTTTATGAGACTGAAGCTAATCAAGCAAAACTCTTCGATGTTCTAGCAGTTTATGCTTGGTTGGACAATGATATTGGTTATGTACAAGGAATGAATGATATTTGCTCACCTTTGATTATTCTTGTTGAGAATGAAGCAGATTGCTACTGGTGCTTTGACCGTGCAATGCGAAGGATGAGAGAGAACTTCAGGTGCAGTGCAAGTTCAATGGGTGTCCAATCTCAGTTGGCTACACTCTCACAGATAATGAAAACAGTTGATCCAAAGCTTCATCATCACCTTGAGGATTTAGATGGAGGAGAATATCTCTTTGCATTTCGCATGCTTATGGTTCTTTTCCGAAGAGAATTTTCTTTTGCAGATACTTTGTATCTTTGGGAGTTGATGTGGGCCATGGAATACAACCCATACATCTTCACAAAATATGAGGATCCAGATCATGCAAAAACAAAAGGCCCCTTGCCTCCAACAAACGACAAACATTTGAAGCAATATGGAAAATTTGAGAGAAAAAATGTGAAGACTGGGCATACAGAGGAAAATAGTGCACTGTCTGTTTTTCTTGTTGCAAGTGTTCTTGAGATCAAGAATAGGCGGATTTTAAATGAGGCCAAGGGCGTGGACGATGTTGTCAAGATCTTGGGAGACATAACCTCAAATCTTGATGCTAAAAAAGCACTTAATGAAGCACTGAAAATTCAGAAAAAATACCTAAGCAAGGCCAAGAAGGGATGACAAAGACAACAATAGATTTTCTGTAACTACATGATGGCAGCTGTGTTTGCATGATCTTCTGAGGTTTCAGTTGCTCTTGACAGACCATTGTTTTCTTTCTTTCATTCTTTTTTTTTAGTCTCTTAGTGATGGCAAGCAGTCCCTGCTCTGCCTGTGTTGAAAATCAAATTATAATCTTATACATGAAAAAAAAAAATACTTCGTTATTGATGTCTGGAGATCTAGAGAACCAGAATACGTCAGCTTTCATATTGTAGAATTATTTTATAGGTAAGAAAGATCTTCTCTTCCTCAATGAGGGACATTTATGCTATCAAATCAAAACTGATAAAATTGTAAAGTATTTTTTTAACCGAAGGACAGTTAATGATTCAAAATGATATATAGTAATGAGGTTTGAACTTAGGA

Coding sequences of Glyma10g04440

Limit To All Plant Sequences

>Glyma10g04440.1   sequence type=CDS   gene model=Glyma10g04440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGTTGTGAGGGACTGTGGGGGGTTCTTATGAAGAGTTCTGGAACTACTGAGTTGAATACCTTTTACCCCATTAAAGCAGAATGCCAAGCTGATGTTCCAGCCACTCGATTTAAACCAAGGGCTGGCAAAACTCTAAGTCAAAGAAGATGGCAGGCATCATTCTCCCAAGATGGTCACTTGGATATTGCAAAAGTGCTAAGACGAATACAGAGAGGGGGTGTCCATCCTTCAATCAAGGGGGAAGTGTGGGAGTTCTTGCTAGGTTGCTATGATCCTAACAGTACACTTGAAGAACGGAATGAGCTCAAGCAACGCAGGAGGGGGCAGTATGATATGTGGAAAGCTGAATGTCAAAAGATGGTCCCAGTCATTGGTAGTGGAAAATTTATTACAACACCCCTCATTGATGATGAAGGCCAGCCAATAGATCCTTCTATGGTAGGCGTCCAGACTTCAGATAAGAAAGTTGTGCAGTGGATGCAATTATTACATCAGATTGGTCTGGATGTTCATCGAACAGATCGAGCACTTGAATTTTATGAGACTGAAGCTAATCAAGCAAAACTCTTCGATGTTCTAGCAGTTTATGCTTGGTTGGACAATGATATTGGTTATGTACAAGGAATGAATGATATTTGCTCACCTTTGATTATTCTTGTTGAGAATGAAGCAGATTGCTACTGGTGCTTTGACCGTGCAATGCGAAGGATGAGAGAGAACTTCAGGTGCAGTGCAAGTTCAATGGGTGTCCAATCTCAGTTGGCTACACTCTCACAGATAATGAAAACAGTTGATCCAAAGCTTCATCATCACCTTGAGGATTTAGATGGAGGAGAATATCTCTTTGCATTTCGCATGCTTATGGTTCTTTTCCGAAGAGAATTTTCTTTTGCAGATACTTTGTATCTTTGGGAGGTAAGGACGATTCCTATGACGATTTAA

>Glyma10g04440.2   sequence type=CDS   gene model=Glyma10g04440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGTTGTGAGGGACTGTGGGGGGTTCTTATGAAGAGTTCTGGAACTACTGAGTTGAATACCTTTTACCCCATTAAAGCAGAATGCCAAGCTGATGTTCCAGCCACTCGATTTAAACCAAGGGCTGGCAAAACTCTAAGTCAAAGAAGATGGCAGGCATCATTCTCCCAAGATGGTCACTTGGATATTGCAAAAGTGCTAAGACGAATACAGAGAGGGGGTGTCCATCCTTCAATCAAGGGGGAAGTGTGGGAGTTCTTGCTAGGTTGCTATGATCCTAACAGTACACTTGAAGAACGGAATGAGCTCAAGCAACGCAGGAGGGGGCAGTATGATATGTGGAAAGCTGAATGTCAAAAGATGGTCCCAGTCATTGGTAGTGGAAAATTTATTACAACACCCCTCATTGATGATGAAGGCCAGCCAATAGATCCTTCTATGGTAGGCGTCCAGACTTCAGATAAGAAAGTTGTGCAGTGGATGCAATTATTACATCAGATTGGTCTGGATGTTCATCGAACAGATCGAGCACTTGAATTTTATGAGACTGAAGCTAATCAAGCAAAACTCTTCGATGTTCTAGCAGTTTATGCTTGGTTGGACAATGATATTGGTTATGTACAAGGAATGAATGATATTTGCTCACCTTTGATTATTCTTGTTGAGAATGAAGCAGATTGCTACTGGTGCTTTGACCGTGCAATGCGAAGGATGAGAGAGAACTTCAGGTGCAGTGCAAGTTCAATGGGTGTCCAATCTCAGTTGGCTACACTCTCACAGATAATGAAAACAGTTGATCCAAAGCTTCATCATCACCTTGAGGATTTAGATGGAGGAGAATATCTCTTTGCATTTCGCATGCTTATGGTTCTTTTCCGAAGAGAATTTTCTTTTGCAGATACTTTGTATCTTTGGGAGTTGATGTGGGCCATGGAATACAACCCATACATCTTCACAAAATATGAGGATCCAGATCATGCAAAAACAAAAGGCCCCTTGCCTCCAACAAACGACAAACATTTGAAGCAATATGGAAAATTTGAGAGAAAAAATGTGAAGACTGGGCATACAGAGGAAAATAGTGCACTGTCTGTTTTTCTTGTTGCAAGTGTTCTTGAGATCAAGAATAGGCGGATTTTAAATGAGGCCAAGGGCGTGGACGATGTTGTCAAGATCTTGGGAGACATAACCTCAAATCTTGATGCTAAAAAAGCACTTAATGAAGCACTGAAAATTCAGAAAAAATACCTAAGCAAGGCCAAGAAGGGATGA

Predicted protein sequences of Glyma10g04440

Limit To All Plant Sequences

>Glyma10g04440.1   sequence type=predicted peptide   gene model=Glyma10g04440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGCEGLWGVLMKSSGTTELNTFYPIKAECQADVPATRFKPRAGKTLSQRRWQASFSQDGHLDIAKVLRRIQRGGVHPSIKGEVWEFLLGCYDPNSTLEERNELKQRRRGQYDMWKAECQKMVPVIGSGKFITTPLIDDEGQPIDPSMVGVQTSDKKVVQWMQLLHQIGLDVHRTDRALEFYETEANQAKLFDVLAVYAWLDNDIGYVQGMNDICSPLIILVENEADCYWCFDRAMRRMRENFRCSASSMGVQSQLATLSQIMKTVDPKLHHHLEDLDGGEYLFAFRMLMVLFRREFSFADTLYLWEVRTIPMTI*

>Glyma10g04440.2   sequence type=predicted peptide   gene model=Glyma10g04440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGCEGLWGVLMKSSGTTELNTFYPIKAECQADVPATRFKPRAGKTLSQRRWQASFSQDGHLDIAKVLRRIQRGGVHPSIKGEVWEFLLGCYDPNSTLEERNELKQRRRGQYDMWKAECQKMVPVIGSGKFITTPLIDDEGQPIDPSMVGVQTSDKKVVQWMQLLHQIGLDVHRTDRALEFYETEANQAKLFDVLAVYAWLDNDIGYVQGMNDICSPLIILVENEADCYWCFDRAMRRMRENFRCSASSMGVQSQLATLSQIMKTVDPKLHHHLEDLDGGEYLFAFRMLMVLFRREFSFADTLYLWELMWAMEYNPYIFTKYEDPDHAKTKGPLPPTNDKHLKQYGKFERKNVKTGHTEENSALSVFLVASVLEIKNRRILNEAKGVDDVVKILGDITSNLDAKKALNEALKIQKKYLSKAKKG*

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