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Report for Sequence Feature Glyma10g04421

Feature Type:gene_model
Chromosome:Gm10
Start:3405460
stop:3407521
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g04421
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54220AT Annotation by Michelle Graham. TAIR10: GRAS family transcription factor | chr3:20070550-20072625 FORWARD LENGTH=653 SoyBaseE_val: 2.00E-130ISS
GO:0008356GO-bp Annotation by Michelle Graham. GO Biological Process: asymmetric cell division SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0009956GO-bp Annotation by Michelle Graham. GO Biological Process: radial pattern formation SoyBaseN/AISS
GO:0051457GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of protein location in nucleus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PF03514PFAM GRAS family transcription factor JGI ISS
UniRef100_B9H8P8UniRef Annotation by Michelle Graham. Most informative UniRef hit: GRAS family transcription factor n=1 Tax=Populus trichocarpa RepID=B9H8P8_POPTR SoyBaseE_val: 0ISS
UniRef100_I1LYM4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LYM4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g04421
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g04421 not represented in the dataset
Glyma10g04421 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04421
ParalogEvidenceComments
Glyma13g18680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04421 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g038500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g04421
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g04421
>Glyma10g04421.1   sequence type=CDS   gene model=Glyma10g04421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAAGTGGGATTTGAGGTGGTTCATGCAAATTATAATTCAAACATGATTCGTCCACACATGCATGAAACATGGGATGATCACTACTCAAATAACATTACTACTTCCTTGCCATTTTCATCTCCAACAACCCCATCAAACCCTTATCCAAAGCCAGCAACAGAAAACAACCATTGCCTCAACATGGGGCAGAATAATGAACTCTGTGATTGGATGGAGGAACAAGTTAGCGACTTCACCAAACACCTTGTTGAAGACTTTCCAGAAACAACAACCACTTCTGATAACTTGCTTTCTAATAACCCAACAAGGGTTAACATTGCTTCCCATCACAACCTTAATGTTCCCTCACTACTTTCACCCAAATTCAGTCAAAGAAAACCCTCATGTTTATTTAGACCCCAGTTTGAGTCCTTCACCAATAATGACCCCCCAAACTTCAATCTTCACATTCAAACAAATACCTCAACTTTAGATCAAAGCCAACACAATGTTGTTTATGATCAAGGGTTGAGCCTAATAACCCTTCTAATGGAGTGTGCAGTGGCAATCTCAGTTGACAACCTAGGTGAGGCTCATAGGATGTTACTAGAGCTAACACAAGTGTCCTCACCCTACAAAGCATCATGTGCTGAACGTGTTGTTGCTTATTTTGCGAAGGCCATGACTAGCAGGGTGATGAATTCATGGCTTGGAGTGTGTTCCCCTTTGGTTGATCACAAAAGCATAAACTCATCATTCCAAGTGTTCAACAACATCTCCCCTTTCATCAAATTTGCTCACTTCACTTCGAACCAAGCAATTCTAGAAGCAGTGAGCCATTGTGACAGCATCCACATAATTGACTTGGACATCATGCAAGGGCTTCAATGGCCAGCTTTTTTCCACATCTTAGCCACAAGAATGGAGGGTAAACCACAGGTAACAATGACAGGTTTTGGAGCCTCAATGGAACTCCTTGTTGAAACAGGAAAACAGCTCACAAACTTTGCAAGAAGGCTTGGCATGTCACTGAAATTCCTCCCTATTGCAACAAAGATTGGTGAAGTAATTGATGTGTCCACGCTTCATGTGAAGCCTGGTGAGGCAGTGGCAGTGCACTGGCTTCAGCATTCACTGTATGATGCAACTGGACCTGATTGGAAAACATTGAGGCTCCTTGAGGAGTTGGAGCCAAGAATCATCACCTTGGTGGAGCAAGATGTGAACCATGGAGGAGGAGGGTCTTTCTTAGACCGTTTTGTTGCTTCCTTGCACTACTACTCCACCCTCTTTGATTCCCTTGGAGCATACTTGCACAATGATGATGAAAACCGGCACCGTGTCGAGCATGGCCTTCTCTCCAGAGAGATCAACAATGTGTTGGGCATAGGAGGACCTAAGAGGAGTGAAGACAAGTTTAGGCAGTGGAGGAATGAGCTTGCTAGGCACTGTTTTGTGAAGCAGGTTCCAATGAGTGCCAATTCAATGGCTCAAGCACAATTGATATTGAACATGTTTTCACCTGCTTATGGGTATAGCCTTGCACAAGTTGAGGGAACTTTAAGGCTTGGATGGAAGGATACTAGCTTGTACACAGCTTCTGCATGGACCTGCAGTAATTCTAGCTAG
Predicted protein sequences of Glyma10g04421
>Glyma10g04421.1   sequence type=predicted peptide   gene model=Glyma10g04421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKVGFEVVHANYNSNMIRPHMHETWDDHYSNNITTSLPFSSPTTPSNPYPKPATENNHCLNMGQNNELCDWMEEQVSDFTKHLVEDFPETTTTSDNLLSNNPTRVNIASHHNLNVPSLLSPKFSQRKPSCLFRPQFESFTNNDPPNFNLHIQTNTSTLDQSQHNVVYDQGLSLITLLMECAVAISVDNLGEAHRMLLELTQVSSPYKASCAERVVAYFAKAMTSRVMNSWLGVCSPLVDHKSINSSFQVFNNISPFIKFAHFTSNQAILEAVSHCDSIHIIDLDIMQGLQWPAFFHILATRMEGKPQVTMTGFGASMELLVETGKQLTNFARRLGMSLKFLPIATKIGEVIDVSTLHVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGGGSFLDRFVASLHYYSTLFDSLGAYLHNDDENRHRVEHGLLSREINNVLGIGGPKRSEDKFRQWRNELARHCFVKQVPMSANSMAQAQLILNMFSPAYGYSLAQVEGTLRLGWKDTSLYTASAWTCSNSS*






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