SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G03900 | AT | Annotation by Michelle Graham. TAIR10: non-intrinsic ABC protein 4 | chr1:991252-992852 FORWARD LENGTH=272 | SoyBase | E_val: 6.00E-113 | ISS |
| GO:0000902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell morphogenesis | SoyBase | N/A | ISS |
| GO:0006858 | GO-bp | Annotation by Michelle Graham. GO Biological Process: extracellular transport | SoyBase | N/A | ISS |
| GO:0006897 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endocytosis | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0042626 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances | SoyBase | N/A | ISS |
| KOG2500 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12847 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF07933 | PFAM | Protein of unknown function (DUF1681) | JGI | ISS | |
| UniRef100_B9SV30 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adaptin ear-binding coat-associated protein, putative n=1 Tax=Ricinus communis RepID=B9SV30_RICCO | SoyBase | E_val: 3.00E-129 | ISS |
| UniRef100_I1L8F1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8F1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g04390 not represented in the dataset |
Glyma10g04390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g18640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g038100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g04390.1 sequence type=CDS gene model=Glyma10g04390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTTCGAGGTGGAGGAGGAGGAGGCGTTCGAGCACACGCTCCTGGTGGTGCGCGAGGTGTCGGTGTACAAGATCCCGCCGCGAAGCACCTCCGGCGGCTACAAGTGCGGCGAGTGGCTCCAGTCCGACAAGATCTGGTCGGGGCGGATCCGCGTCGTGTCCCGGCGCGACCGCTGCGAGATTCGCCTCGAGGATCCGAGCTCCGGTGAGCTCTTCGCCGCCTGCTTCGTCTACGCCGGCCAGCGCGAGACCGCCGTCGAGCCCGTCCTCGACTCGTCGCGCTACTTCGTCCTCAAGATCGAGGATGGCCAAGGCAAGCACGCCTTCATTGGCCTAGGGTTCAATGAGCGCAACGAGGCCTTCGATTTCAACGTCGCGCTCTCCGATCACGAGAAGTACGTCCGCCGCGAGCACGAGAAGGAGGCCGGAGACGGAGCCGCCGCTGAGGAGTCGCAGATCGACATTCACCCCGCCGTCAATCACAGGCTCAAGGAAGGGGAAACCATTAGGATTAATGTGAAGCACAAATCAACTAGTGGAACTGGCATGCTCTCAGCTGCTGGCCTAACCAGTGGGCATGCTGCGACACCAAAGCCAAAAATCGTGAGTCTTGCTCCCCCACCAAGTGGAGCTGGGAAAATCAGGTCTCCTCTTCCACCCCCACCAAATGATCCAGTTGCTGCTCGGACTGCTTCCACCAGTCGTGCTACTGGTCCTAAAGGGACATACGAAAGTGTGAAACATTCTACCAACGCTTTATCAGATTTTTCTCAACTACAGAAAAATCTTCCCACAACAACCACCTCTGGATCGACCACAGCTTCAGGATGGGCAGCCTTCTGA
>Glyma10g04390.1 sequence type=predicted peptide gene model=Glyma10g04390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSFEVEEEEAFEHTLLVVREVSVYKIPPRSTSGGYKCGEWLQSDKIWSGRIRVVSRRDRCEIRLEDPSSGELFAACFVYAGQRETAVEPVLDSSRYFVLKIEDGQGKHAFIGLGFNERNEAFDFNVALSDHEKYVRREHEKEAGDGAAAEESQIDIHPAVNHRLKEGETIRINVKHKSTSGTGMLSAAGLTSGHAATPKPKIVSLAPPPSGAGKIRSPLPPPPNDPVAARTASTSRATGPKGTYESVKHSTNALSDFSQLQKNLPTTTTSGSTTASGWAAF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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