Glyma10g04370 - SoyBase

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Report for Sequence Feature Glyma10g04370

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3363644
stop:	3368328
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23300	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:8333521-8335902 FORWARD LENGTH=611	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF58	Panther	DEHYDRATION-RESPONSIVE PROTEIN-RELATED	JGI		ISS
PF03141	PFAM	Putative methyltransferase	JGI		ISS
UniRef100_I1L8E8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8E8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8H118	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable methyltransferase PMT1 n=1 Tax=Arabidopsis thaliana RepID=PMT1_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g04370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04370

Paralog	Evidence	Comments
Glyma13g18630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g037900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g04370

Limit To All Plant Sequences

>Glyma10g04370.1   sequence type=CDS   gene model=Glyma10g04370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGAGGGAAAGCAGATGGGAAACCGAGAAAGCGGTTGGTCACAACTGTGTTACTTTTAGCGATTGTTGGTGCTTTATTTTACCTGTATTCTAGGAAAAATGGTTCATCTTCTATTGAGCATGGTAGCAAATCTGTAAAATTTGGAGATGACAGTGCTATACCAAAGACCATTCCAGTCTGTGATGATCGTCTATCGGAGCTGATTCCATGTCTAGACAGAAATTTCATATACCAAACAAGATTGAAGCTTGATCTGACTTTAATGGAGCACTACGAACGGCACTGCCCAATGCCTGAGCGGCGCTATAATTGTTTGATTCCCCCTCCTCCAGGGTACAAGATTCCAATCAAGTGGCCCAAAAGCAGAGATCAGGTATGGAGGGCAAATATACCTCATACCCATCTTGCAACTGAGAAATCTGACCAGAGATGGATGGTTGTAAAAGGTGAAAAGATAGGTTTTCCTGGTGGAGGAACCCACTTCCATTATGGCGCTGGCAAGTATATTGCATCAATTGCCAATATGCTCAACTTTCCAAACAATGTGATTAACAATGAAGGAAGACTTCGCAATGTTTTTGATGTTGGCTGTGGTGTTGCAAGCTTTGGAGGATATCTTCTTTCTTCTGATGTAATAGCAATGTCATTAGCACCAAATGATGTTCATGAAAACCAAATACAGTTTGCTTTAGAAAGAGGAATTCCGGCATATCTTGGTGTCTTGGGGACACTAAGACTCCCTTACCCTAGTAGATCTTTTGAACTTGCCCATTGTTCTCGCTGTAGAATTGATTGGCTTCAGAGAGATGGCATACTTCTTCTTGAGCTAGATAGGATACTCAGGCCGGGAGGCTACTTTGCCTACTCATCTCCTGAAGCCTATGCTCAGGATGAAGAGGATCAGAGAATATGGAAAGAAATGAGTGCTCTTGTAGGGAGGATGTGTTGGAAAATAGCTTCTAAGAGGAACCAGACTGTCATATGGGTCAAGCCTCTTACAAATGACTGTTACTTGAAAAGAGAGCCTGATACTCGCCCTCCGCTCTGCAGTCCTAATGATGATCCTGATGCTGTTTGGGGAGTTAAAATGAAAGCTTGCATCTCACGCTACTCTGATCAGATGCACAGAGCAAAAGGAGCTGGTTTGGCTCCTTGGCCAGCTCGATTGACCACTCCACCTCCTCGTCTTGCTGACTTTAACTATTCCACTGAAATGTTTGAAAAGGACACGGAATATTGGCAACAAGAAGTTACTAATTACTGGAAAATGCTAGGCAATAAAATTAAGCCTGACACAATTCGGAATGTGATGGACATGAAAGCAAACTTGGGTTCATTTGCAGCTGCTTTGAAGGACAAAGATGTTTGGGTTATGAATGTGGTGCCAGAAAATGGGGCAAACACTCTCAAGATCATATATGACAGAGGGCTGTTAGGAACAGTTCACAACTGGTGTGAAGCATTTTCGACCTACCCTCGTACTTATGATCTGCTCCATGCATGGACTATATTTTCTGATATTATTGAGAAGGAGTGCAGTCCAGAGGATTTATTGATTGAGATGGATAGAATCCTGAGGCCGAAAGGTTTCATCATTGTCCATGATAAGCGATCGGTGGTGTTGTCTATAAAGAAGTTCTTGCCAGCATTGCACTGGGTTGCAGTGGTCACATCTAATGTAGAGCAAGATTCAAACCAAGGCAAAGATGATGCAGTGTTGATAATTCAGAAGAAGATGTGGCTGACAAGTGAGAGCATCCGCATTTCAGAATAA

Predicted protein sequences of Glyma10g04370

Limit To All Plant Sequences

>Glyma10g04370.1   sequence type=predicted peptide   gene model=Glyma10g04370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKADGKPRKRLVTTVLLLAIVGALFYLYSRKNGSSSIEHGSKSVKFGDDSAIPKTIPVCDDRLSELIPCLDRNFIYQTRLKLDLTLMEHYERHCPMPERRYNCLIPPPPGYKIPIKWPKSRDQVWRANIPHTHLATEKSDQRWMVVKGEKIGFPGGGTHFHYGAGKYIASIANMLNFPNNVINNEGRLRNVFDVGCGVASFGGYLLSSDVIAMSLAPNDVHENQIQFALERGIPAYLGVLGTLRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRILRPGGYFAYSSPEAYAQDEEDQRIWKEMSALVGRMCWKIASKRNQTVIWVKPLTNDCYLKREPDTRPPLCSPNDDPDAVWGVKMKACISRYSDQMHRAKGAGLAPWPARLTTPPPRLADFNYSTEMFEKDTEYWQQEVTNYWKMLGNKIKPDTIRNVMDMKANLGSFAAALKDKDVWVMNVVPENGANTLKIIYDRGLLGTVHNWCEAFSTYPRTYDLLHAWTIFSDIIEKECSPEDLLIEMDRILRPKGFIIVHDKRSVVLSIKKFLPALHWVAVVTSNVEQDSNQGKDDAVLIIQKKMWLTSESIRISE*

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