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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma10g04340

Feature Type:gene_model
Chromosome:Gm10
Start:3312005
stop:3313936
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G31160AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF640) | chr2:13277903-13278562 FORWARD LENGTH=219 SoyBaseE_val: 2.00E-86ISS
GO:0007389GO-bp Annotation by Michelle Graham. GO Biological Process: pattern specification process SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010075GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth SoyBaseN/AISS
GO:0048438GO-bp Annotation by Michelle Graham. GO Biological Process: floral whorl development SoyBaseN/AISS
GO:0048439GO-bp Annotation by Michelle Graham. GO Biological Process: flower morphogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04852PFAM Protein of unknown function (DUF640) JGI ISS
UniRef100_I1L8E6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8E6_SOYBN SoyBaseE_val: 7.00E-151ISS
UniRef100_Q6K5X1UniRef Annotation by Michelle Graham. Most informative UniRef hit: G1-like6 protein n=2 Tax=Oryza sativa RepID=Q6K5X1_ORYSJ SoyBaseE_val: 3.00E-77ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g04340 not represented in the dataset

Glyma10g04340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g18590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g037600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g04340.1   sequence type=CDS   gene model=Glyma10g04340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAATTCAAGAATTTATGGAGTCGTGTAACACTGACATCACCACCACCACCGCAACAACCACCAGCAACAGCTTAGTTGGTAGCTCCAATTCCCCTTCTGCTTCCTCCACCACCAGCAGCCGCTACGAGAACCAAAAGCGCCGTGACTGGAACACCTTTGGCCAGTACCTCAAGAATCACCGACCCCCTCTCTCCCTCTCCAGGTGCAGCGGTGCACACGTCCTTGAATTTCTCAGGTACTTGGACCAATTTGGCAAGACCAAAGTGCACACTCCGATCTGTCCCTTTTATGGGCACCCTAACCCTCCAGCACCATGTCCATGTCCTCTAAGACAAGCCTGGGGTAGCCTTGATGCACTCATAGGTCGTCTTAGGGCAGCTTTTGAAGAAAACGGAGGGAAACCTGAAACCAACCCTTTTGGAGCAAGAGCTGTGAGGCTCTACCTTCGTGAGGTTCGTGAACTTCAGTCCAAAGCTAGAGGAATCAGTTATGAGAAGAAGAAACGAAAGCGTCCACCACCACCACCACCACCACAACAACAACTACAACAATCATTGCCTCTACCTCTTCACCACCACCACCACCACCACCTCCCTCCCCCAGGTGCAACTCAATGA

>Glyma10g04340.1   sequence type=predicted peptide   gene model=Glyma10g04340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSIQEFMESCNTDITTTTATTTSNSLVGSSNSPSASSTTSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRELQSKARGISYEKKKRKRPPPPPPPQQQLQQSLPLPLHHHHHHHLPPPGATQ*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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