|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G54790 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr3:20281830-20284363 REVERSE LENGTH=760 | SoyBase | E_val: 4.00E-152 | ISS |
GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
GO:0000151 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex | SoyBase | N/A | ISS |
GO:0005871 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: kinesin complex | SoyBase | N/A | ISS |
GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
GO:0019894 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinesin binding | SoyBase | N/A | ISS |
PTHR23315 | Panther | BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING | JGI | ISS | |
PTHR23315:SF43 | Panther | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / U-B | JGI | ISS | |
PF00514 | PFAM | Armadillo/beta-catenin-like repeat | JGI | ISS | |
PF04564 | PFAM | U-box domain | JGI | ISS | |
UniRef100_B9T1B5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9T1B5_RICCO | SoyBase | E_val: 0 | ISS |
UniRef100_I1L8E5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8E5_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma10g04320 not represented in the dataset |
Glyma10g04320 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.10g037500 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g04320.1 sequence type=CDS gene model=Glyma10g04320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATTTAGGTCAGACAGATACTACTTCTGTGAAATGTCTGATCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGTCAAACAATGAAACCTATGCCCTTTCAGAACATCTGTAATAATATGGTTGGGGTGTTAAAGCGCTTGAAACCGGTGCTTGATGACATTATGGATTACCAAATCCCTTCAAATGTAAATCTATGTAAAGAGTGTGAGGAATTGGATATGCAGGTTAATGAAGCTAGGGATTTCATTGAAAAATGGAGTCCAAAGATGAGCAAGATTCACAGTGTTCTACAAGGTGGTACTTTGTTGATCAAGTTACAGAGCACCTCTCTAGATATCTGTCACATGATAGTTAAATCCTTACAGTCACCTCCATCTGCATCAGTTTTGGCTAATCTTCAGCACTATATCCAGGAACTTCAGTGTTTCAAGAAGGAAATGGCTATGGTCTTCATAGAAGAAGCACTAAGAAACCAAAGAGATAATGTTGAACTTTGCACGGAGCATCTCAAGGAAATTATTGAGTTACTTAAATTGACATCAAATCAGGAGCTCTTAAGAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAAATGAAGGGGGACTTGGAAGAACTTGATGATATTGTGATTCTTGTCTGTAATTTGCGTGATTATGTGATGAAAACTGAGTGTCCTGTAGTCAAGAGTGGTCTGTTAATCCCTCTATACTTCCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTCATTGTGGCTTCAGGTCAAACATATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAAACTCGTCAGAGACTTACTCCTACAAATCTCATACCTAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAATGTCAAACTTTCTGGTAACTCTGAGCAAAATAATTCTGCCTGTATCACATCCCCCTCGGACCATTTATTGCCTCAAGATTTAACTCATGATTGTTGTGTTGAGTCTTTACCTAGTAGCAATTCCATTTCAAGATCAGCTCTGCAAACTGAAAATGCATTTGAAAAGCAAAAGGGTGATAACTCTTTCAGATTATGCGAAGAATACAATGGATGCCAGAGTGGAGCAATTGAAAAGTGTGAGCAACAGTCCCCATATACTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTACTGATTGTGCGCATGCAGTTTCAAAAGAGGTGTCAGGGATATCCAATAAGCTTCAAAATGTGAAGGTACTGTCTGGAGAAATCACAAAGGTGTGTCCTCCTTCTCCTGGTAACAAACAATCAGGGATCTCTCCGTGGTTATCTGGAACGCAATTTCAAAGCCCTGGATCAAATGTGGGAGTGTTGGAGAATGGAAATAATAATAATAGTCATTCAAGATTTGATTCCCATCCTGTTTTCAACTCCGGGTCGGATGAATTAACCACCTCATCTCATGTTATTAGATTGATTGAAGACCTTCACAGCCAATCAATTGAAACGCAAACTGCTGCTGCAGAAGAATTGAGGCTCCTTACAAAGCATAACAAGGAAAACCGTATCATTGTTGGGCAGTATGGGGCTGTTGCACCTTTGCTTTCACTGTTATATTCAGACTTGCAGGTAACACAAGAGCATGCTGTTACAGCTCTGCTGAATTTATCAATTAATGAAGACAACAAGGCCTTGATCATGGAAGCAGGAGCCATAGAACCACTTATCCATGTTTTAAGTACAGGAAATGATAGTGCCAAGGAGAATTCTGCAGCAACTATATTCAGCCTCTCAATAATTGAGAACAATAAAGCAAGAAATTGGCCGTTCTGGAGCAGTTTAAAGCTTTGGTGGATCTTCTTGCCTCAGGAACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTCTATTTAACCTGTCAATATTTCATGAGAATAAAGCTCGTATAG
>Glyma10g04320.1 sequence type=predicted peptide gene model=Glyma10g04320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHLGQTDTTSVKCLINSISRFIHLVSCQTMKPMPFQNICNNMVGVLKRLKPVLDDIMDYQIPSNVNLCKECEELDMQVNEARDFIEKWSPKMSKIHSVLQGGTLLIKLQSTSLDICHMIVKSLQSPPSASVLANLQHYIQELQCFKKEMAMVFIEEALRNQRDNVELCTEHLKEIIELLKLTSNQELLRESIAVEKERLNAEVNKMKGDLEELDDIVILVCNLRDYVMKTECPVVKSGLLIPLYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTPTNLIPNYTVKAMIATWCEENNVKLSGNSEQNNSACITSPSDHLLPQDLTHDCCVESLPSSNSISRSALQTENAFEKQKGDNSFRLCEEYNGCQSGAIEKCEQQSPYTHSRSESFSSSISSTDCAHAVSKEVSGISNKLQNVKVLSGEITKVCPPSPGNKQSGISPWLSGTQFQSPGSNVGVLENGNNNNSHSRFDSHPVFNSGSDELTTSSHVIRLIEDLHSQSIETQTAAAEELRLLTKHNKENRIIVGQYGAVAPLLSLLYSDLQVTQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLSTGNDSAKENSAATIFSLSIIENNKARNWPFWSSLKLWWIFLPQELLEERRMLLLLYLTCQYFMRIKLV*
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