SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06190 | AT | Annotation by Michelle Graham. TAIR10: Rho termination factor | chr1:1892467-1894078 REVERSE LENGTH=401 | SoyBase | E_val: 3.00E-51 | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010239 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast mRNA processing | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:1901259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast rRNA processing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0019843 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: rRNA binding | SoyBase | N/A | ISS |
| GO:0043621 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein self-association | SoyBase | N/A | ISS |
| PF07498 | PFAM | Rho termination factor, N-terminal domain | JGI | ISS | |
| UniRef100_D7KG06 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KG06_ARALL | SoyBase | E_val: 2.00E-56 | ISS |
| UniRef100_I1L8E4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L8E4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g04310 not represented in the dataset |
Glyma10g04310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g18510 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g037400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g04310.1 sequence type=CDS gene model=Glyma10g04310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGCAAACGTTGCATGCTTTCGTCGCCAAAAATCTTGGCTGTGGAATGGCAGAAGGCAAGTGTCTCCCATGTTCAGGTGTTTCTGGAAGAACTGCTGCTGTATATTCCTACTCTTCTCTAGGTCATCACAGAATTCATTCCCGTGTCCAAGTTAGAGGACTAAAGTGTGGCTTTAGGGGTGCATCTTTTGTATGTGAAGCAAAGAGGAACCCAGATTTCTCAAGGCAAAACAAGCACGGGTCCTCCAGAAGCAGAAATCGGAACAGTGATGGGAGAGACAGCTTTGAGAGCTTTGACGACGATATGTTTTCATTAAAAAATGGACCGCCTGTGTCTCTTTCAACCTCAGGAAAATTCCAGGCCACTTCAGCCCCTGGTCCTAGGGAGAAGGAGATTGTTGAGCTATTTAGGAAGGTCCAGGCTCGGCTGCGTGAGAGGGCTGCTTCCAAAGAAGAAAAGAAAGTTGAAGCCTCCCGAGCGCAAAGTAAAGAGAACAGTACTGTAGATTCGCTCCTCAAACTACTGAAGAAACACTCAGTTGAGCAAGTGAAGAGAAGTAGTGGGGGAGGCAGAGGAAAAGATTTTAGTTCGGACCAAATGCAAGAAAGTAACCAATATGATGGAGGACGAAATGCTAAAATTTCTGATTTGGATAGTACTCCTAAGGATGAGCCCCAAGAGGACAATGTCTTCTCCTCCTCGGTAGCCAGGCCTCGGTCAAATTTCCAAAGAAGGTCTCCCGTTCCTCGTGTAAAATACCAGCCTGTCTCTAACGATGAGGATGATACGGATGTAGTGCCAGTAGGTAGTGAGGATACAGAGAACAATCAGGATCAGATAGATTTGAAGCTTGATGATGAAGCCGAGTCTGACTCTGAATCTGATGTTGATTCAAAGGATGAGCTGTTCTTCCCAAACATAGGGATGGCTGAATTGTCTGAGGATGATGACTCCGAGCAAACCTATAATGATGAAAGTGTGGAGGAGCAGCCGGTGGCTCAACATGAGGATTTTAGTGCACTGAAGCTGTCCGAATTGAGGGCACTTGCAAAGACTCGTGGCCTGAAAGGATTCTCAAAAATGAAGAAGAGTGACCTCATGGAGTTGCTAACTGAGACCTGA
>Glyma10g04310.1 sequence type=predicted peptide gene model=Glyma10g04310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSQTLHAFVAKNLGCGMAEGKCLPCSGVSGRTAAVYSYSSLGHHRIHSRVQVRGLKCGFRGASFVCEAKRNPDFSRQNKHGSSRSRNRNSDGRDSFESFDDDMFSLKNGPPVSLSTSGKFQATSAPGPREKEIVELFRKVQARLRERAASKEEKKVEASRAQSKENSTVDSLLKLLKKHSVEQVKRSSGGGRGKDFSSDQMQESNQYDGGRNAKISDLDSTPKDEPQEDNVFSSSVARPRSNFQRRSPVPRVKYQPVSNDEDDTDVVPVGSEDTENNQDQIDLKLDDEAESDSESDVDSKDELFFPNIGMAELSEDDDSEQTYNDESVEEQPVAQHEDFSALKLSELRALAKTRGLKGFSKMKKSDLMELLTET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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