Report for Sequence Feature Glyma10g04240
Feature Type: gene_model
Chromosome: Gm10
Start: 3229474
stop: 3232458
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g04240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G14385 AT
Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8287144-8288622 REVERSE LENGT
SoyBase E_val: 9.00E-56 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0048573 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005773 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuole
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR13476 Panther
UNCHARACTERIZED
JGI ISS
PF09340 PFAM
Histone acetyltransferase subunit NuA4
JGI ISS
UniRef100_C6SZ07 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ07_SOYBN
SoyBase E_val: 2.00E-108 ISS
UniRef100_Q5NAY1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=4 Tax=Oryza sativa RepID=Q5NAY1_ORYSJ
SoyBase E_val: 9.00E-58 ISS
Expression Patterns of Glyma10g04240
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g04240
Paralog Evidence Comments
Glyma13g18430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g04240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g036900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g04240
Coding sequences of Glyma10g04240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g04240.1 sequence type=CDS gene model=Glyma10g04240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAATCGGAAGGGCAAAAGGGTACGGTGAACCCGTCCGCGATGTTAGCGTCTCTGCTTAGTAGGAGAGCCAAACTTCACGAAGAGCTTCGCAGCATTGAAAAGCAGGTGTATGATATGGAGACAAGTTACTTACAAGATCCTGGACAATGTGGGAATGTATTAAAAGGATTTGAAGGCTTCCTATCTTCGTCGAAGAACACTGCACTCTTGAAAAGGTCTAGAAAGTTTCAACCTGAAGATAGGCTCTTCTCACTATCTTCAGTGACCTCGCCAGCGGCGGAAGAGCTTGCAGCTGGACGAGATGATGGTAGACCAGATTATGGTCCTGGTCGTTCAAAAGGTGGAGGAATTTATGCTAATGGACAGGGTAAACCAAAGAAAGGTAGAGGTGGGGCAAGAGAAGCAAAGAGAGCAAGGGCTTCAAGTGAACAAGATTTTGATTATGAAGATGATCCTGACCTGACCTTGTGA
Predicted protein sequences of Glyma10g04240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g04240.1 sequence type=predicted peptide gene model=Glyma10g04240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MESEGQKGTVNPSAMLASLLSRRAKLHEELRSIEKQVYDMETSYLQDPGQCGNVLKGFEGFLSSSKNTALLKRSRKFQPEDRLFSLSSVTSPAAEELAAGRDDGRPDYGPGRSKGGGIYANGQGKPKKGRGGAREAKRARASSEQDFDYEDDPDLTL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
