SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24530 | AT | Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:8378964-8383154 FORWARD LENGTH=341 | SoyBase | E_val: 2.00E-87 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009813 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016706 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | SoyBase | N/A | ISS |
| KOG0143 | KOG | Iron/ascorbate family oxidoreductases | JGI | ISS | |
| PTHR10209 | Panther | FE(II)/ ASCORBATE OXIDASE SUPERFAMILY | JGI | ISS | |
| PTHR10209:SF55 | Panther | OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI | JGI | ISS | |
| PF03171 | PFAM | 2OG-Fe(II) oxygenase superfamily | JGI | ISS | |
| UniRef100_B9T297 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase, putative n=1 Tax=Ricinus communis RepID=B9T297_RICCO | SoyBase | E_val: 1.00E-140 | ISS |
| UniRef100_UPI000233C95F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C95F related cluster n=1 Tax=unknown RepID=UPI000233C95F | SoyBase | E_val: 0 | ISS |
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Glyma10g04150 not represented in the dataset |
Glyma10g04150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g036100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g04150.1 sequence type=CDS gene model=Glyma10g04150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCAACTTCTTTCAAACCGTTTCAATGTGGGATCTCTCCCTGAAGACTACATATTCCCACCAGAATTAAGACCAGGAGACCTCAAAGTCCCCTTCAGCACCAACATCCCAGTGATTGATCTCAGTGAAGCACAAAATGGTGATAGAACTAACACAATTCAGAAAATTATCAACGCTTCTGAGGAGTTTGGATTCTTTCAGGTTATCAATCATGGAATCTCGGTGAACTTAATGGACGAAGCAGGGGGTGTTTTCAAGGAGTTATTTGAGATGCCGGCTGAGGAGAAACAAAAAATGTGTTCAAATGACCCTTCAAAGACATGCAAGATGTTCACTAGCAATGTCAATTATGCAACTGAAAAGGTTCACCTGTGGCGAGACAATTTTAGGCACCCATGCCATCCTTTGGAGCAGTGGCAACATCTCTGGCCTGAAAATCCAACTAACTACAGAGAGTGTGTTGGGGAGTTTTCAGTTGAAGTTAAAAAATTGGCTTCAAGGATCTTGAGTTTGATTAGTGAAGGGCTTGGTCTGAAGAGTGGATATTTTGAGAATGATCTTACTGGATCAATGGTTCTTTCAATTAATCATTATCCACCATGCCCTGAACCAAGTTTGGCACTTGGAATAACTAAGCACTCAGATCCAAATCTCATAACCATTTTAATGCAAGATCATGTATCTGGCCTTCAAGTATTCAAGGATGGAAATTGGATTGCGGTTGAGCCTATTCCTAATGCATTTGTGGTAAACATAGGCCACCAGTTGCGGATAATCAGTAATGGTAAGCTACTAAGTGCTGAGCACAGAGCAGTGACAAATTCAAGTGATACTCGCACCTCTGCTGCTTTCTTCGTAGCTCCTTCAGAGGAATGTATCATAGAGCCAGCGCAAGCTCTTACTGCTGAACATCACCCTCCAATTTTTAAGTCCTTCAAATACAAAGACTTCATCTCTTACTACTTTGCCAAAACTGGTGATACAGAAGTAGTGCTGAAATCATTTAAAGCACACAAGAATTAA
>Glyma10g04150.1 sequence type=predicted peptide gene model=Glyma10g04150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDQLLSNRFNVGSLPEDYIFPPELRPGDLKVPFSTNIPVIDLSEAQNGDRTNTIQKIINASEEFGFFQVINHGISVNLMDEAGGVFKELFEMPAEEKQKMCSNDPSKTCKMFTSNVNYATEKVHLWRDNFRHPCHPLEQWQHLWPENPTNYRECVGEFSVEVKKLASRILSLISEGLGLKSGYFENDLTGSMVLSINHYPPCPEPSLALGITKHSDPNLITILMQDHVSGLQVFKDGNWIAVEPIPNAFVVNIGHQLRIISNGKLLSAEHRAVTNSSDTRTSAAFFVAPSEECIIEPAQALTAEHHPPIFKSFKYKDFISYYFAKTGDTEVVLKSFKAHKN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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