Report for Sequence Feature Glyma10g04140
Feature Type: gene_model
Chromosome: Gm10
Start: 3138224
stop: 3140147
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g04140
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G43420 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:17451790-17452917 FORWARD LENGTH=375
SoyBase E_val: 3.00E-72 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR14155 Panther
RING FINGER PROTEIN 6/12/38
JGI ISS
PTHR14155:SF2 Panther
RING-FINGER PROTEIN
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_B9T298 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9T298_RICCO
SoyBase E_val: 2.00E-124 ISS
UniRef100_I1L8D0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8D0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g04140
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g04140
Paralog Evidence Comments
Glyma13g18320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g04140 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g036000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g04140
Coding sequences of Glyma10g04140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g04140.2 sequence type=CDS gene model=Glyma10g04140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACTGAGAAAGAACCACTCCTACAACAACAAGCTTGGTTATGAAGCTTTCCCACCCATCAAAACCCAGGCTGGAACACTCCAACACCCACCACAACCTGCTTCCTCAGACTATGCTTTTCCCATATTAGTCATTGTTGTTCTCAGCATCTTGGCCACTGTCTTGTTACTCCTCAGCTACTTCACTTTTCTAACCAAATACTGCTCAAACTGGCGTCAAGTTAACCCAATGAGATGGATTTCCATCCTTCGAGCTCGGCACGACGAGGACCCCTTCATAGCATTCTCTCCTACCATGTGGAACCGAGGGCTTGATGACTCTATCATCAGAGAAATCCCAACTTTTAAGTTCATAAAAGAAGAAGGTGAGGATCAAAGTGTGTATTATGGTTGTGTGGTTTGTTTGACTGAGTTCAAGGAACATGATGTGCTGAAAGTTCTTCCCAATTGCAACCATGCTTTCCATTTGGACTGCATTGACATTTGGCTTCAGACCAATTCCAATTGTCCACTTTGCAGATCAGGCATTTCAGGAACCACCCACTGTCCATTGGACCACATCATAGCACCAAGTTCTTCTCCTCAGGATTCTCAGTTACTCTCCAACATGGGAAGTGATGAAGATTTTGTGGTTATTGAACTTGGAGGAGAACATGGAGCAGCACTTCCACAGGTGCAACAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATAGAAACCACTCTACAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGCATTGATATCAGAAAGAAAGATGATCAGTTCCATATTCAGCCTATTAGAAGATCTTTCTCAATGGACTCAGCACATGATAGACAAACTTACTTGGATGCTCAAGTCATTATACAACAAAGTAGGCTTCAGAATGAGGCTAGTGCTAGTGAGGATTGTAATAGCAGATGTCGAAGACCATTCTTCCCGTTTTGCTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTTTGGAGAATGATGTTTAA
Predicted protein sequences of Glyma10g04140
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g04140.2 sequence type=predicted peptide gene model=Glyma10g04140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALRKNHSYNNKLGYEAFPPIKTQAGTLQHPPQPASSDYAFPILVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWISILRARHDEDPFIAFSPTMWNRGLDDSIIREIPTFKFIKEEGEDQSVYYGCVVCLTEFKEHDVLKVLPNCNHAFHLDCIDIWLQTNSNCPLCRSGISGTTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEHGAALPQVQQQERNDSRGSLAHRNHSTRKCHHVSIMGDECIDIRKKDDQFHIQPIRRSFSMDSAHDRQTYLDAQVIIQQSRLQNEASASEDCNSRCRRPFFPFCYGKGSKNAVLPLENDV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
