SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G31240 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:13317570-13319518 REVERSE LENGTH=617 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG1840 | KOG | Kinesin light chain | JGI | ISS | |
| PTHR19959 | Panther | KINESIN LIGHT CHAIN | JGI | ISS | |
| PTHR19959:SF78 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_B9T299 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Kinesin light chain, putative n=1 Tax=Ricinus communis RepID=B9T299_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LYJ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LYJ0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g04130 not represented in the dataset |
Glyma10g04130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g18310 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g035900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g04130.2 sequence type=CDS gene model=Glyma10g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATATATCTCTACCCTGCTTTTACATTCTCTCTTTCTTTCCCCTGCTTCTTCAATGGAGGGTTTTACAAAGGTTTAACTTTAACCCCAAACAAACCTTGAAGCAAACGAAAGCTTTTCAACTCACCACAATGAGAAAACTCTGGAATTCGCTGTCTCTCGTCGGTCGTCGGAGATCAATCTCTTACTTCTCCAAATCGTACACTTCCGATGCACCTTTCAACTGCTGCACCAAAACCCACGGTTTACTTATCAGACCCAACAACAAATTTGCGACCACCCCATTTCGAAACATGGACACCCTCGTTCAGAAACCCTCTCCAATCCCCTCGAGGCAGCGAAAAATCATGGGAAAATCGCAGCTTGAAGAAGCTTTCGAGTCCGCAGAAACCACCGAGGAAATGCTCAAAGCCTTCAGCAACATGGAAGGGGTTTTTGAGGAGAGAGAGCTTGGATTAGCTTCTTTGAAAATTGGCCTTAAACTTGACCATGAAGGTGAGGACCCTGAGAAAGCTCTTTCCTTTGCCAAGAGAGCTTTGAAAGCCTTGGAAAAAGATAACAACAACAACACCCCTTCTTCTTTGCCTGTTGCCATGTGTTTGCAGCTGTTGGGGTCTGTTAGTTTTAGCTTGAAAAGGTTTAGTGATAGTTTAGGGTACCTTAATAGGGCTAACAGGGTGTTGGCTAGGTTGCAGGATGTGGGTGTTGTTAGTGTTTATGATGTTAGGCCTGTGTTGCATGCTGTGCAGCTTGAGTTGGCCAATGTTAAGAATGCCATGGGAAGGAGGGAGGAGGCTCTTGAGAATCTTAGGAAGTGTTTGGAGATTAAGGAGGTGACTTTTGAGGAGGATAGTGGGGAGTTGGGCAAGGGGAACCGTGACTTGGCCGAGGCTTATGTCGCAGTTTTGAACTTCAAGGAGGCGCTGCCATATTGCTTGAAGGCGCTGGAGATTCATATAAAGGGGTTGGGGATGAATTCGGTGGAGGTTGCGCACGACAGGAAGCTTCTCGGGATTGTGTATAGCGGGTTGGAGGAGCACGAGAAGGCGCTGGAGCAGAATGTTTTGGCGCAGAGGATTTTGAAGAACTGGAATCTGAACGCGGATTTGTTGCGTGCTGAGATTGACGCTGCGAATATGATGATTGCTCTGGGGAGGTATGATGAGGCTGTTTGTACTTTGAAGGGTGTTGTGCAGCAGACAGAGAAGGATAGCGAGACTCGGGCACTTGTGCTTGTGTCGATGGCGAAAGCATTGTGTAATCAGGAGAAGTTTGTGGACTGCAAAAGCTGCTTGGAGGTTTCTCTTGGGATTCTTGACAAAAGGGAACGAATTTCCCCGGTGGAAGTTGCTGAGGCGTACTCGGAGATATCGATGCAGTATGAAACCATGAATGAGTTTGAAACTGCGATTTCGTTGCTGAAGAGGACACTAGCTTTGCTTGAGATGCAGCCACAAGAGCAGCACTCGGAGGGAAGTATTTCTGCGAGAATAGGTTGGTTACTGTTGTTGACTGGTAAGGTGCAGCAGGCTATTCCTTATTTGGAAAGTGCTGCTGAAAGATTGAAAGATAGCTTTGGTCCCAAGCATTTCGGAGTGGGTTATATCTACAACAATTTGGGGGCTGCGTATTTGGAGTTGGATAGACCCCAGTCAGCAGCGCAAATGTTTGCAGTAGCAAAGGATATCATGGATACATCTCTTGGTCCACATCATGCAGATACAATTGAATCATGTCAAAACCTTTCAAAGGCTTATGGCGAGATGGGAAGCTATGTCCTTGCAATTGAATTTCAACAGCAAGTTGTTGATGCTTGGGAAAGCCATGGAGCAAGTGCAGAAGATGAGTTTAGAGAAGCTCAACGACTTCTAGAACAATTAAAGAAAAAAGCCCGTGACGCCTCTGCAAACGAGCTTCATATGAAGGCTTTGCCAAATGAGCTTCCTATCAAGGCTTTGCCCTTACCACATAAATCCTGA
>Glyma10g04130.2 sequence type=predicted peptide gene model=Glyma10g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high HISLPCFYILSFFPLLLQWRVLQRFNFNPKQTLKQTKAFQLTTMRKLWNSLSLVGRRRSISYFSKSYTSDAPFNCCTKTHGLLIRPNNKFATTPFRNMDTLVQKPSPIPSRQRKIMGKSQLEEAFESAETTEEMLKAFSNMEGVFEERELGLASLKIGLKLDHEGEDPEKALSFAKRALKALEKDNNNNTPSSLPVAMCLQLLGSVSFSLKRFSDSLGYLNRANRVLARLQDVGVVSVYDVRPVLHAVQLELANVKNAMGRREEALENLRKCLEIKEVTFEEDSGELGKGNRDLAEAYVAVLNFKEALPYCLKALEIHIKGLGMNSVEVAHDRKLLGIVYSGLEEHEKALEQNVLAQRILKNWNLNADLLRAEIDAANMMIALGRYDEAVCTLKGVVQQTEKDSETRALVLVSMAKALCNQEKFVDCKSCLEVSLGILDKRERISPVEVAEAYSEISMQYETMNEFETAISLLKRTLALLEMQPQEQHSEGSISARIGWLLLLTGKVQQAIPYLESAAERLKDSFGPKHFGVGYIYNNLGAAYLELDRPQSAAQMFAVAKDIMDTSLGPHHADTIESCQNLSKAYGEMGSYVLAIEFQQQVVDAWESHGASAEDEFREAQRLLEQLKKKARDASANELHMKALPNELPIKALPLPHKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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