Glyma10g04120 - SoyBase

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Report for Sequence Feature Glyma10g04120

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3123200
stop:	3130326
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31260	AT	Annotation by Michelle Graham. TAIR10: autophagy 9 (APG9) \| chr2:13322291-13326293 REVERSE LENGTH=866	SoyBase	E_val: 0	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2173	KOG	Integral membrane protein	JGI		ISS
PTHR13038	Panther	APG9 AUTOPHAGY 9	JGI		ISS
PTHR13038:SF10	Panther	AUTOPHAGY PROTEIN 9	JGI		ISS
PF04109	PFAM	Autophagy protein Apg9	JGI		ISS
UniRef100_I1L8C8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8C8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q3T8Z5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Autophagy protein 9 (Fragment) n=1 Tax=Glycine max RepID=Q3T8Z5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g04120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04120

Paralog	Evidence	Comments
Glyma13g18300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g035800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g04120

Limit To All Plant Sequences

>Glyma10g04120.1   sequence type=CDS   gene model=Glyma10g04120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTAACAAGCCAAGAGGTGCTAGTGCTTTTAATGTATTGAATTGGAAACGTCAAGGTGAATCATCTGTGACAACAGGTTTACTTCAGGATGTTCCACCAGAGATTGAATTGTCGGATTATAGAAGGATCCCAAGTCCAGGTAGTGAGAGCCCTTCAGACCTACTTAATGGTGAGAGCCTAAATGTAGAACCCATTGCTGATTTGGATTTCTTCTTCGAAAGGCTTTACAGCTACTACTGTGAGAAAGGGCTCTGGTGCATCATCATAAAGTGGATAGTTGAACTTCTGAGTCTTGGTTTCACCATATGTTTTTCGGGTTTTTTCTTACTATATGTTGACTGGAATGGGCTCCGAAATGCAAAGTGTGGGATGAATGCAGTTGAATCTGGAAGGAAGCCTTGTGATCTTGCTAAAGAAGCTCTTCATGAGCACCCTTTAACCCCATTTACACTTAGCAAAGCTATTATTGTTGGATACTTGGGAATATTTTCTATCTATTGGATATTTTGCTTCTTGAGATTCTTTGTTCAACTAAAGGATACTTTGGATATCCGACAGTTTTACTACAATAATCTCCGTGTTACTGATAATGATATTCAAACCATGCCCTGGGCTACAATTCTTGAAAAGGTTGTTCTTGTGCAAAGCTCACGACAACTCTGTGTGGTAAAGGATCTTTCTGCTCATGACATGGTAATGAGGTTGATGCGGAAGGAGAACTACTTGATTGGAATGCTCAACAAGGGTGTGCTTTCTTTCCCCATTTCTCAGTGGGTCCCAGGTGCTGGACCTACAGTGAAATCTGGTACTAATGGCACACAATATCGTCTAATGCTTCCCAAGACCCTTGAGTGGACTTTGAACTGGTGCATCCTGCAAAGCATGTTTGATCGAAACTTCTGTGTCAGAAGAGATTTTGTGTCAAATCCAAAGACATTAAAGAAAAGGCTTATGATAGTTGGGATTGTAATGCTTTTACTTTCTCCATTTCTTGTCATATTCATGCTGGTATATCTCTTTCTGAGGCACGCTGAACAATTTTATAATCACCCAAGCACAGCATCATCTCGAAGATGGTCAAATTTGTCACGATGGGTCTTTAGGGAATTCAATGAGGTGGATCATCTCTTCAGGCACCGGATTAATAGCAGTGTATTACATGCTTCTAACTATATCAAGCAATTTCCTTCACCTATCATATCTATCATTTCAAAATTCATATCATTTGTATCGGGTGGCTTTGCTGCAATTCTGATCATCATTGCTTTTATAGAGGAGTCTCTGCTGGAGGGTCATATATTTGGTCGGAACTTGTTCTGGTATGCTGCTGTTTTTGGAACTATAACTGCTATTAGACGGGCTGCAATTGCAGATGAGCTTCTAGTCATAGACCCCGAAGGAGCAATGTCAATGGTAGTTGAGCATACGCATTATATGCCCAAGAGATGGCGGGGCAAAGAAAGTACTGAAATGGTCCGGATTGAGTTTGAAACCTTATTCCAGTATAGTGGGATGATGTTACTTGAGGAGATGGCCTCGATTTTCCTTACTCCATACTTACTTCTGTTGGTTGTCCCAAAGCGGGTTGATGATATCTTGCAGTTTATTGCAGATTTTACTGTAGATGTTGAAGGTGTTGGTCATGTTTGCAGTTATAGTGTCTTCAATTTTCAAGAGCATGGAAACAGTAATTATGGTTCTCCGTTTAATGCACCTCGCAGCCAGAGAAGTTCCCAGGGAAAGTTGGAGAAATCATTTTTGAGCTTTCAGAGTAGTTACCCTTCATGGGAACCAAATGCTCAAGGGAGGCAGTTTCTGCATAATCTGAGAACATTCAGAGACCAAAACTTAGCAGGACACATAAACCAACATGGATTTTCCCCTCCTAGACTGTGGAGAGGCAGTCCCAACATGGGAAGCAATGGAGACAGAAACAGGTTTACATCCAGGGAAATGCCATATAGTACTTTTGCAACTGGCAATCATTTGGGTTCTTTGTGGCTAATTGAATCCAGAAATCAAAACAATCATCCCTATCTTCTTGATTGGTACTACACTTCCCAACCTCATGATACAGCTCAAAGACATGTTCAAGCTGATGATCCATTTGAAGTAACGGAGCATCAATTCCCAGATTGGATGCCCTCTATCTTGGTACAAAATGAGCAACACGGGCATGAAGGATACATAAACGAGTATTGTGATGAACGCGCCGCTTCCCATCTCGAGGCTTCCACATCAGCTCCCATCTTCAGGGAAAGCCTAAGTCAGGATCAACATTCCATTGATATGCCCCTCACTGCCAGGAGTCGTTGGTGGGCAAGAAGTGATCCCCAGAGTGGACAAGGTCAGACAAGCTTTTTTGAGCCACCAGATTTCAATCACCAACCAGTATACAATTACCATGATAATAGAGGGTCAGAGGATCAAGATCAAGAACATCACTTGTACTGGGGAGATTATCACAAATTATCTAGTACAGCACATGCAGATGATTTATATGCAGGAGAATTCAATCTTCTTTTTGATGATGTTTATAGCAGTCCTCCAGAAAATCCCACTGTAAATCCTAGCACTGCAACCTTTTAA

Predicted protein sequences of Glyma10g04120

Limit To All Plant Sequences

>Glyma10g04120.1   sequence type=predicted peptide   gene model=Glyma10g04120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFNKPRGASAFNVLNWKRQGESSVTTGLLQDVPPEIELSDYRRIPSPGSESPSDLLNGESLNVEPIADLDFFFERLYSYYCEKGLWCIIIKWIVELLSLGFTICFSGFFLLYVDWNGLRNAKCGMNAVESGRKPCDLAKEALHEHPLTPFTLSKAIIVGYLGIFSIYWIFCFLRFFVQLKDTLDIRQFYYNNLRVTDNDIQTMPWATILEKVVLVQSSRQLCVVKDLSAHDMVMRLMRKENYLIGMLNKGVLSFPISQWVPGAGPTVKSGTNGTQYRLMLPKTLEWTLNWCILQSMFDRNFCVRRDFVSNPKTLKKRLMIVGIVMLLLSPFLVIFMLVYLFLRHAEQFYNHPSTASSRRWSNLSRWVFREFNEVDHLFRHRINSSVLHASNYIKQFPSPIISIISKFISFVSGGFAAILIIIAFIEESLLEGHIFGRNLFWYAAVFGTITAIRRAAIADELLVIDPEGAMSMVVEHTHYMPKRWRGKESTEMVRIEFETLFQYSGMMLLEEMASIFLTPYLLLLVVPKRVDDILQFIADFTVDVEGVGHVCSYSVFNFQEHGNSNYGSPFNAPRSQRSSQGKLEKSFLSFQSSYPSWEPNAQGRQFLHNLRTFRDQNLAGHINQHGFSPPRLWRGSPNMGSNGDRNRFTSREMPYSTFATGNHLGSLWLIESRNQNNHPYLLDWYYTSQPHDTAQRHVQADDPFEVTEHQFPDWMPSILVQNEQHGHEGYINEYCDERAASHLEASTSAPIFRESLSQDQHSIDMPLTARSRWWARSDPQSGQGQTSFFEPPDFNHQPVYNYHDNRGSEDQDQEHHLYWGDYHKLSSTAHADDLYAGEFNLLFDDVYSSPPENPTVNPSTATF*

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