Glyma10g04040 - SoyBase

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Report for Sequence Feature Glyma10g04040

Feature Type:	gene_model
Chromosome:	Gm10
Start:	3037585
stop:	3038955
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g04040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42430	AT	Annotation by Michelle Graham. TAIR10: lateral organ boundaries-domain 16 \| chr2:17663668-17665153 FORWARD LENGTH=245	SoyBase	E_val: 6.00E-72	ISS
GO:0010311	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF03195	PFAM	Protein of unknown function DUF260	JGI		ISS
UniRef100_B9S4L6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LOB domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S4L6_RICCO	SoyBase	E_val: 2.00E-81	ISS
UniRef100_UPI000233C808	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C808 related cluster n=1 Tax=unknown RepID=UPI000233C808	SoyBase	E_val: 4.00E-157	ISS

Expression Patterns of Glyma10g04040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04040

Paralog	Evidence	Comments
Glyma13g18191	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g035000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g04040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g04040

Limit To All Plant Sequences

>Glyma10g04040.2   sequence type=transcript   gene model=Glyma10g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATCCCCAGATTTTTGCACCATTTCCCAGTGTGCCCGTGTGCCTAAAAAACTTAATCACTTCTTTCAGCTTCACACACTAATAAGTGATAATAATAACACGATTCCATTATTCTAAAGCACAGGTACACACGCTATGGCTTCTGCAACTGGCTCTGGTTCTTCTTCTGGCTTCGGATCTCCCTGTGGGGCATGCAAGTTTCTGCGAAGAAAGTGTGTCACTGATTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGAGCTGCTAAATTCGCTGCCATTCATAAGGTGTTCGGTGCTAGCAACGTTTCCAAGCTGCTCTTGCGTATACCAGCTCACGGTCGTTTTGAGGCAATACTCACAATTGCTTATGAAGCTCAAGCTCGCCTTAGAGACCCTGTTTATGGTTGTGTCTCCCATATTTTCGCCTTGCAACAACAGGTAGCATGCTTGCAGGCACAAGTAATGCAAATGAAGGCACAGCTAGACCAGAACCACATGGAGCCCAGGAACTTTGAGAATCATTGGTCAGAGAATGTTGCACAATCATTCAATCCATTTTGTCCCACTTCCATGAATAACCTCATATCTCCTCAGAGCTCACTCGATTCATTGGGTTATAGCAGCATCAATGATGGAATGAGCATGCTAGATGTACAAAGCAGCAGAGAGGAATATTTCGCACTGCAAGCCTGTAATTCTAAGAAAAGATCATATAACAATGACTTGGGTGAGCTGCAAGAATTGGCACTTAGGATGATAAGGAACTGTGACTAGGCTAGCTATAATTAAAGCTAATTAATCCTTAATTAATTGTCTTTGTTTAATTTCTTGAAGGATATTAATATTCCTTTGATGTTGAAGGGAGATAGCCTTTTGCTAGTGTTGTATATACTGATGAGAGTGTCAAGGAGAAACGTGCTTGCCATAAATGATAAGCCTAAACCAACATTAGGATTTTGGCTTTTCTGTTTTTGGATTCAATCCAAAAGAAATCAAAATTTTTAAGACTGGCAAACTCTTTTTCTCTCTAGCACTCTGACGAGTTATATTGTGTTTACTTAAACTAGCGTAGTAATTAACTTCCAATGTTTAAATAATGTAGTTTTATTTGAAATA

Coding sequences of Glyma10g04040

Limit To All Plant Sequences

>Glyma10g04040.1   sequence type=CDS   gene model=Glyma10g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCAACTGGCTCTGGTTCTTCTTCTGGCTTCGGATCTCCCTGTGGGGCATGCAAGTTTCTGCGAAGAAAGTGTGTCACTGATTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGAGCTGCTAAATTCGCTGCCATTCATAAGGTGTTCGGTGCTAGCAACGTTTCCAAGCTGCTCTTGCGTATACCAGCTCACGGTCGTTTTGAGGCAATACTCACAATTGCTTATGAAGCTCAAGCTCGCCTTAGAGACCCTGTTTATGGTTGTGTCTCCCATATTTTCGCCTTGCAACAACAGGCACAAGTAATGCAAATGAAGGCACAGCTAGACCAGAACCACATGGAGCCCAGGAACTTTGAGAATCATTGGTCAGAGAATGTTGCACAATCATTCAATCCATTTTGTCCCACTTCCATGAATAACCTCATATCTCCTCAGAGCTCACTCGATTCATTGGGTTATAGCAGCATCAATGATGGAATGAGCATGCTAGATGTACAAAGCAGCAGAGAGGAATATTTCGCACTGCAAGCCTGTAATTCTAAGAAAAGATCATATAACAATGACTTGGGTGAGCTGCAAGAATTGGCACTTAGGATGATAAGGAACTGTGACTAG

>Glyma10g04040.2   sequence type=CDS   gene model=Glyma10g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGCAACTGGCTCTGGTTCTTCTTCTGGCTTCGGATCTCCCTGTGGGGCATGCAAGTTTCTGCGAAGAAAGTGTGTCACTGATTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGAGCTGCTAAATTCGCTGCCATTCATAAGGTGTTCGGTGCTAGCAACGTTTCCAAGCTGCTCTTGCGTATACCAGCTCACGGTCGTTTTGAGGCAATACTCACAATTGCTTATGAAGCTCAAGCTCGCCTTAGAGACCCTGTTTATGGTTGTGTCTCCCATATTTTCGCCTTGCAACAACAGGTAGCATGCTTGCAGGCACAAGTAATGCAAATGAAGGCACAGCTAGACCAGAACCACATGGAGCCCAGGAACTTTGAGAATCATTGGTCAGAGAATGTTGCACAATCATTCAATCCATTTTGTCCCACTTCCATGAATAACCTCATATCTCCTCAGAGCTCACTCGATTCATTGGGTTATAGCAGCATCAATGATGGAATGAGCATGCTAGATGTACAAAGCAGCAGAGAGGAATATTTCGCACTGCAAGCCTGTAATTCTAAGAAAAGATCATATAACAATGACTTGGGTGAGCTGCAAGAATTGGCACTTAGGATGATAAGGAACTGTGACTAG

Predicted protein sequences of Glyma10g04040

Limit To All Plant Sequences

>Glyma10g04040.1   sequence type=predicted peptide   gene model=Glyma10g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASATGSGSSSGFGSPCGACKFLRRKCVTDCIFAPYFCSEQGAAKFAAIHKVFGASNVSKLLLRIPAHGRFEAILTIAYEAQARLRDPVYGCVSHIFALQQQAQVMQMKAQLDQNHMEPRNFENHWSENVAQSFNPFCPTSMNNLISPQSSLDSLGYSSINDGMSMLDVQSSREEYFALQACNSKKRSYNNDLGELQELALRMIRNCD*

>Glyma10g04040.2   sequence type=predicted peptide   gene model=Glyma10g04040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASATGSGSSSGFGSPCGACKFLRRKCVTDCIFAPYFCSEQGAAKFAAIHKVFGASNVSKLLLRIPAHGRFEAILTIAYEAQARLRDPVYGCVSHIFALQQQVACLQAQVMQMKAQLDQNHMEPRNFENHWSENVAQSFNPFCPTSMNNLISPQSSLDSLGYSSINDGMSMLDVQSSREEYFALQACNSKKRSYNNDLGELQELALRMIRNCD*

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