SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G44160 | AT | Annotation by Michelle Graham. TAIR10: Outer membrane OMP85 family protein | chr3:15889225-15891814 REVERSE LENGTH=362 | SoyBase | E_val: 1.00E-120 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0019867 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: outer membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR12815 | Panther | SORTING AND ASSEMBLY MACHINERY (SAM50) PROTEIN | JGI | ISS | |
| PTHR12815:SF6 | Panther | gb def: essential protein with similarity to s. pombe hypothetical protein e241976, ynl0 | JGI | ISS | |
| PF01103 | PFAM | Surface antigen | JGI | ISS | |
| UniRef100_G7IRF9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Outer envelope protein of 80 kDa n=1 Tax=Medicago truncatula RepID=G7IRF9_MEDTR | SoyBase | E_val: 1.00E-126 | ISS |
| UniRef100_UPI000233C807 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C807 related cluster n=1 Tax=unknown RepID=UPI000233C807 | SoyBase | E_val: 0 | ISS |
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Glyma10g04031 not represented in the dataset |
Glyma10g04031 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g034900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g04031.2 sequence type=transcript gene model=Glyma10g04031 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGCAAACAAAAGTATCCATACTGGAAGATCAAAGCTAGACGTTGGAGTTGATTTCACTCGAAAGCTATGTAGTTCTTGCATGCTCTCCCCTCGCAGGCTATCTAGCATTCTGGTTTCTATGGCTACTGGCAGCCTTCGCTTGAAGCACCCTGGCCTATTTTATTTCAGAGATTTGCTTGATATGTCGTGGCACAAGGGGCTGCATGATTCAGACCTATTGCTCACGTATAGGTACCATAGACCTCTACATATTGGTCCCCCGTCTTTAACAATTAAGCATTCAGTTTCACCTGAGGTTGGAATCCATGGAATTCCCATGAACAAGTTTTCACATTCCCTAAGTCGAGGTGTAAGGTTGTCCAAGTTGTCGATTGGGTTTGATTATATTGCGCCTTCAGAATCTGATTCGAGCAAAGCCAAAGCAACCGGTGTATACTTTAAGCGTTTTCACTTTACGCACGATGGAGGCCGCTCTATAAGCACAGATCAAGATGGTTTTCAACTGACTCGCAGTGGAGGTCCATCTGACAACATAATAGTGATTAGTCAAGAATCTCGTTATGAAGATGAAAGTGATCACGGCTTTACTAACTTTAGTGTCCAGATGGAACTAGGGACTCCAATTCCACCAATCTTGCTATCCTACTACCGGTTTGAAGTTTCTGCTGCAAGAGGAATTAAACTTGGACCAACAATTTTCTTCTCACGTTATGGGATCCTTTGCTCCATATCAAGCATTTGCAATCGGTGGTCCCAGTAGTGTGCGAGGCTATGGGGAGGGTGCAGTTGGTGTTGGACAGTCGTGTCTGGTATCTACAAGTGAATTGTCAATCCCATTGTTATTATACTTGGAGAAATCTTGCCCGCCAGTTTGGAGTCCTTATATTGATTGTCTTGGAACCTTAAAAATCAAC
>Glyma10g04031.1 sequence type=CDS gene model=Glyma10g04031 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGCAAACAAAAGTATCCATACTGGAAGATCAAAGCTAGACGTTGGAGTTGATTTCACTCGAAAGCTATGTAGTTCTTGCATGCTCTCCCCTCGCAGGCTATCTAGCATTCTGGTTTCTATGGCTACTGGCAGCCTTCGCTTGAAGCACCCTGGCCTATTTTATTTCAGAGATTTGCTTGATATGTCGTGGCACAAGGGGCTGCATGATTCAGACCTATTGCTCACGTATAGGTACCATAGACCTCTACATATTGGTCCCCCGTCTTTAACAATTAAGCATTCAGTTTCACCTGAGGTTGGAATCCATGGAATTCCCATGAACAAGTTTTCACATTCCCTAAGTCGAGGTGTAAGGTTGTCCAAGTTGTCGATTGGGTTTGATTATATTGCGCCTTCAGAATCTGATTCGAGCAAAGCCAAAGCAACCGGTGTATACTTTAAGCGTTTTCACTTTACGCACGATGGAGGCCGCTCTATAAGCACAGATCAAGATGGTTTTCAACTGACTCGCAGTGGAGGTCCATCTGACAACATAATAGTGATTAGTCAAGAATCTCGTTATGAAGATGAAAGTGATCACGGCTTTACTAACTTTAGTGTCCAGATGGAACTAGGGACTCCAATTCCACCAATCTTGCTATCCTACTACCGGTTTGAAGTTTCTGCTGCAAGAGGAATTAAACTTGGACCAACAATTTTCTTCTCACGGATGAGTGGTGGAACAGTTATGGGATCCTTTGCTCCATATCAAGCATTTGCAATCGGTGGTCCCAGTAGTGTGCGAGGCTATGGGGAGGGTGCAGTTGGTGTTGGACAGTCGTGTCTGGTATCTACAAGTGAATTGTCAATCCCATTGAACAAGAAACTAACAGGAGTTATCTTCCTGGACTGTGGATCTGACCTGTGGAGCAGTTATAAAGTTCCCAACAATCCAGGAGAGAGACGTGGTAAACCAGGAATTGGATTTGGGATTGGGGGTGGCATTCGATTCAAAACCCCGTTGGCTCAAATACAAGTTGATTATGCCATTAATGCCTTTCAACAAGGAACTACATATTTTGGAATTAGTGATCTGATTCTGTGA >Glyma10g04031.2 sequence type=CDS gene model=Glyma10g04031 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGCAAACAAAAGTATCCATACTGGAAGATCAAAGCTAGACGTTGGAGTTGATTTCACTCGAAAGCTATGTAGTTCTTGCATGCTCTCCCCTCGCAGGCTATCTAGCATTCTGGTTTCTATGGCTACTGGCAGCCTTCGCTTGAAGCACCCTGGCCTATTTTATTTCAGAGATTTGCTTGATATGTCGTGGCACAAGGGGCTGCATGATTCAGACCTATTGCTCACGTATAGGTACCATAGACCTCTACATATTGGTCCCCCGTCTTTAACAATTAAGCATTCAGTTTCACCTGAGGTTGGAATCCATGGAATTCCCATGAACAAGTTTTCACATTCCCTAAGTCGAGGTGTAAGGTTGTCCAAGTTGTCGATTGGGTTTGATTATATTGCGCCTTCAGAATCTGATTCGAGCAAAGCCAAAGCAACCGGTGTATACTTTAAGCGTTTTCACTTTACGCACGATGGAGGCCGCTCTATAAGCACAGATCAAGATGGTTTTCAACTGACTCGCAGTGGAGGTCCATCTGACAACATAATAGTGATTAGTCAAGAATCTCGTTATGAAGATGAAAGTGATCACGGCTTTACTAACTTTAGTGTCCAGATGGAACTAGGGACTCCAATTCCACCAATCTTGCTATCCTACTACCGGTTTGAAGTTTCTGCTGCAAGAGGAATTAAACTTGGACCAACAATTTTCTTCTCACGTTATGGGATCCTTTGCTCCATATCAAGCATTTGCAATCGGTGGTCCCAGTAG
>Glyma10g04031.1 sequence type=predicted peptide gene model=Glyma10g04031 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGANKSIHTGRSKLDVGVDFTRKLCSSCMLSPRRLSSILVSMATGSLRLKHPGLFYFRDLLDMSWHKGLHDSDLLLTYRYHRPLHIGPPSLTIKHSVSPEVGIHGIPMNKFSHSLSRGVRLSKLSIGFDYIAPSESDSSKAKATGVYFKRFHFTHDGGRSISTDQDGFQLTRSGGPSDNIIVISQESRYEDESDHGFTNFSVQMELGTPIPPILLSYYRFEVSAARGIKLGPTIFFSRMSGGTVMGSFAPYQAFAIGGPSSVRGYGEGAVGVGQSCLVSTSELSIPLNKKLTGVIFLDCGSDLWSSYKVPNNPGERRGKPGIGFGIGGGIRFKTPLAQIQVDYAINAFQQGTTYFGISDLIL* >Glyma10g04031.2 sequence type=predicted peptide gene model=Glyma10g04031 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGANKSIHTGRSKLDVGVDFTRKLCSSCMLSPRRLSSILVSMATGSLRLKHPGLFYFRDLLDMSWHKGLHDSDLLLTYRYHRPLHIGPPSLTIKHSVSPEVGIHGIPMNKFSHSLSRGVRLSKLSIGFDYIAPSESDSSKAKATGVYFKRFHFTHDGGRSISTDQDGFQLTRSGGPSDNIIVISQESRYEDESDHGFTNFSVQMELGTPIPPILLSYYRFEVSAARGIKLGPTIFFSRYGILCSISSICNRWSQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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