SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g04020

Feature Type:gene_model
Chromosome:Gm10
Start:3024335
stop:3027255
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g04020
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58170AT Annotation by Michelle Graham. TAIR10: BET1P/SFT1P-like protein 14A | chr3:21542632-21543775 REVERSE LENGTH=122 SoyBaseE_val: 6.00E-66ISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005484GO-mf Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
KOG3385 KOG V-SNARE JGI ISS
PTHR12791Panther GOLGI SNARE BET1-RELATED JGI ISS
PTHR12791:SF5Panther BET1-LIKE SNARE 1 JGI ISS
PF05739PFAM SNARE domain JGI ISS
UniRef100_C6SZI2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZI2_SOYBN SoyBaseE_val: 1.00E-83ISS
UniRef100_D5FGC6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bet1-like snare 1-1 n=1 Tax=Malus x domestica RepID=D5FGC6_MALDO SoyBaseE_val: 4.00E-69ISS

Expression Patterns of Glyma10g04020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g04020
ParalogEvidenceComments
Glyma13g18170 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g04020 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g034800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g04020
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g04020
>Glyma10g04020.1   sequence type=CDS   gene model=Glyma10g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCTAGAAGAGATGGTCGCAACAACAGAGTTGCTCTTTTTGATGGTATTGAGGAGGGTGGCATCAGAGCATCGTCTCTTTATTCCTCAAGTTCTTCCCATGAAATTGATGAACATGATAATGAACAAGCATTGGATGGATTGCAAGATAGAGTCAATCTGCTTAAAAGATTGTCAGGTGATATAAATGAGGAAGTGGATAGTCATAACCGGATGCTGGATCGTATGGGAAATGATATGGATTCTTCGAGAGGAGTCCTCTCAGGCACTATGGATAAATTCAAAATGGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTTGTGCTTTTTCTTATAATATACTATCTGACTAGGTAA
Predicted protein sequences of Glyma10g04020
>Glyma10g04020.1   sequence type=predicted peptide   gene model=Glyma10g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNARRDGRNNRVALFDGIEEGGIRASSLYSSSSSHEIDEHDNEQALDGLQDRVNLLKRLSGDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSSRRMFSLVASFVVLFLIIYYLTR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo