Glyma10g03963 - SoyBase

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Report for Sequence Feature Glyma10g03963

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2972691
stop:	2995604
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03963

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54560	AT	Annotation by Michelle Graham. TAIR10: Myosin family protein with Dil domain \| chr1:20371649-20379745 REVERSE LENGTH=1529	SoyBase	E_val: 0	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0030036	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization	SoyBase	N/A	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0051645	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi localization	SoyBase	N/A	ISS
GO:0051646	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion localization	SoyBase	N/A	ISS
GO:0060151	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome localization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016459	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: myosin complex	SoyBase	N/A	ISS
GO:0003774	GO-mf	Annotation by Michelle Graham. GO Molecular Function: motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0160	KOG	Myosin class V heavy chain	JGI		ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF36	Panther	MYOSIN I, HIGH MOLECULAR WEIGHT FORM	JGI		ISS
PF00063	PFAM	Myosin head (motor domain)	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
PF02736	PFAM	Myosin N-terminal SH3-like domain	JGI		ISS
UniRef100_B9S4V9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Myosin XI, putative n=1 Tax=Ricinus communis RepID=B9S4V9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C805	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C805 related cluster n=1 Tax=unknown RepID=UPI000233C805	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g03963

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g03963 not represented in the dataset	Glyma10g03963 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03963

Paralog	Evidence	Comments
Glyma13g18140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03963 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g034400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03963

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g03963

Limit To All Plant Sequences

>Glyma10g03963.1   sequence type=CDS   gene model=Glyma10g03963   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGAGAGCGGGATTCCAGAAAATATTGTTGTTGGTTCTCATGTTTGGGTTGCAGATCCAGAACTAGTTTGGATTGATGGACTGGTACTGAATATTAATGGTGAAGAAGCAGAAATTCAAACTAGTAATGAGAATAAGGTTGTTTCCCGTTTGTCAAAATTATATCCCATGGATATGGAAGCGCCTACTGATGGGGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGCATAATTTGGAAACCAGATACATGATGAATGAAATATATACTTATACCGGGAATATTCTCATTGCAATCAATCCCTTCCAAAATCTTTCACACCTGTATGATACTAATGTGATGCAAAGATACAAGGGAGCAACGATTGGAGGCTTGGGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCAATGATTAATGAGGAAAAAAGCAACTCAATTCTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGCAGTACCTGGCATATTTGGGTGGTAACACTTCATCTGAAGGACGAACTGTTGAAAAACAAGTACTAGAAGTAAGAAGAATTACAGGAATATTCAGATTATTATCTTTCAAGTTGGTATCAGAGCTCCCGATCCAGGGGGCTTTGCTTCTGCATTCTTCTAGGCAGCCTTCATTGCTGCAGTTGATACTGTTTCAGTGCCCAGTTACTGCATATACCACTGGTTGCCGTCCGTCGCTGTCCTCCGCCGTCAGCTTCCTTCCGCCGTCGTCAGCCACCGTCTGCCACCGCGAAACTGATCCGAGAACCCACCAGGAGAAGCGCCTTCTCCAGATTGGCCTATCCCTGAAGTTTCACTGCCAACCGCTGCCGGACGTGCCGCCACTCGCCGTTTTGTCTCCGGCGTGTGTAAGCCACGCGCCACCGTACAGGCCGTCTTTTTCGACGGTGCCTCCACAGAACAGGTCGCCGGCCCACCCCGGTTCTGTTCCAGGAGTTATTTTGCCCCAAAACAGCCTCAGAAACCCTAACTCGAGAAGGTTACGGTTACCGTTCTACGTTTTTTCTCTATCTTGTTTCTGCGATTTTCCTCTTCCCATTATGTCTACAGACAAGGCAGTCCCTCTTCTCAAAAAACTTCCTTCTCTCTCAGAGGTGTTCTACACTGTACAAGGAGAAGAAACTCAGAGGTCAGTAATGTTGGAAGGGAGCAGTTTTGTTGATGGTTCAGCCTTAGCTACTGGCAAGGGTCCCACAAAAGGCTCATCCTCTTCATTTGGGAAGCCTCTCACAAAGGCTAACCGTGATGATCGCTGGTGCAGCTATTGTAGGAAGTCAGGTCATACTAAGGAGAAATGTTTTAGACTTCATGGAAAGGAGAAGTCAAATCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAATGACAATTCCAGCCGTTTTGGAAAATTTGTTGAGATTCAATTTAATAAGTATGGACGAATATCTGGTGCAGCCATTAGAACTTATCTTCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCATTGTTTCTACCTTCTCTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAGTTGGGAGATCCTAGATCATTTCACTACCTTAATCAATCCAATTGCTATGAATTAGTTGGTGTAAATGCTGCTCAAGAGTATCTGAGCACCAAGAGAGCCATGGATATAGTGGGAATCAGTCAGGAGGAGCAGGATGCTATTTTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAACATTAAGTTTGCAAAATCAGAAGAAACTGATTCATCAGTTCTAGAAGATGAAGCATCCAGGTTTCATCTCCAAACAACAGCAGAACTTCTCATGTGTGATCCTAATTGTTTGGAAGGTGCACTACGTGAGCGTGTGATGATTACTCCAGAAGAAATCATCAAAAGAAGTCTTGATCCTCTTGGTGCTACAGTTAGCAGGGATGGTTTAGCCAAAACACTATATTCTCGATTATTTGACTGGTTAGTCCAAAAAATTAATATCTCCATTGGGCAGGATCCTAGCTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAACGAATAGTTTTGAGCAGTTTTGTATAAATTTCACAAATGAAAAGCTGCAACAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACAAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGAAACCAGGTGGAATCATTGCTCTGCTCGATGAAGCTTGTATGTTTCCGAAGTCAACTCATGAAACATTTTCACAGAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGGCACGCTCAGATTTCTCTGTTGTTCATTATGCAGGGGAGGTTCAGTATCAATCTGAGCAATTTTTAGACAAGAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTGCTTCAAAATGTTCATTTGTATCAGGCCTTTTTGCTCCACTTTCTGAGGAAACAGCCAAATCTGCTAAATTTTCTTCTATTGGTTCTCGTTTCAAGCTACAATTACAACAGTTGATGGATGCACTCAATCTGACAGAGCCACACTATATTAGATGTATAAAGCCAAATAGTCTATTAAAACCTTTCATATTTGAAAATATGAATGTTATCCAACAATTACGATCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCCACTCACTGGACCTTTCATGATTTCTTAACTCGATTAGGCATTCTTGCTCCGGAGGTTCTTCAAGGGAACTTCGAAGAAAAGGATTCATGTAAAAAGATTTTGGAGAAGATTGGGCTGACAGGTTATCAGATAGGTGAAACACAAATATTCCTAAGAGCTGGTCAGATGGCTGAATTGGATGCTCGGAGAGCATTCCTGCTCAGTAATTCTGCAATAGTTATCCAAAAGCATACTAAAACTCATTTTAGTCAGAAAAGATATATTGCATTGCAAAAGTCCTCTGTTTTTCTGCAATCCATTTGCAGAGGAGAACTGGCTCGAAGATCGTATTATCACATGAAGAGGGAAGCAGGTGCAGTCAGAATTCAAAAGTATATGCGTGGAACACTAGCCAGGAAATGGTACACCGAAATAAAGATCTCTGCCATTGTCTTGCAGACAGGTTTTCGAGCAGTGGCTGCTTGTAATAAATTTAGATATAGAAAGCAAATTAGTGCATCGACTACTATTCAGTCCAATTGGCGCCGGCATAAAGCTCTCTCTGACTATCAGAACCTTAGGAAAGCATCAATCAGTTCACAAACCATCAATCACTCCAGTGATAAACATGAACAGAAGGTTTTTGAGACACCTGCGCAAAATGAAAGTCCTTCTATGGAAGAATGTTCAAATCCTGTCCAAGAAGAATCCTCAAGTCCTTTCCAAGATGATGAAAGCATTGAAGCTATCAGGGATTCCTCTATTCCTCTCAAAGACACTGAAAAGATTGAGGTTCTTACTATAGAAATAAAAAACTTGAAGGTCATGTTGCAGGAAGAAAAACAAAGAGGTGATGAATATGAAAGGAAATATGTAGAAGCTCAAGGATCTAGTGAAGAGTTACGCAAAAAGTTAGCAGAAACTGAAAAAAGAGTACATCAGCTTCAGGACTCGTTGAACAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGGCGATCTTGAGTACTTCATCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGGGTTGACATTGCTTCCAGTAACTCTGATACTTCATCTACAGACTCTGATTTCACATTTCCGGCTCCTGTTTCAAATACTGAACTTTTATCTTCCCCAGAGTCAAATTCTTTCCAACTAGTAGTTCAGGATGTCACTGCAGGGGATGGATCGGGATCTGAAAGTGGAAAGGAGGGTTCATTTGATGATTTCTTCTAG

Predicted protein sequences of Glyma10g03963

Limit To All Plant Sequences

>Glyma10g03963.1   sequence type=predicted peptide   gene model=Glyma10g03963   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQESGIPENIVVGSHVWVADPELVWIDGLVLNINGEEAEIQTSNENKVVSRLSKLYPMDMEAPTDGVDDMTKLAYLHEPGVLHNLETRYMMNEIYTYTGNILIAINPFQNLSHLYDTNVMQRYKGATIGGLGPHVFAIAEAAYRAMINEEKSNSILVSGESGAGKTETTKMLMQYLAYLGGNTSSEGRTVEKQVLEVRRITGIFRLLSFKLVSELPIQGALLLHSSRQPSLLQLILFQCPVTAYTTGCRPSLSSAVSFLPPSSATVCHRETDPRTHQEKRLLQIGLSLKFHCQPLPDVPPLAVLSPACVSHAPPYRPSFSTVPPQNRSPAHPGSVPGVILPQNSLRNPNSRRLRLPFYVFSLSCFCDFPLPIMSTDKAVPLLKKLPSLSEVFYTVQGEETQRSVMLEGSSFVDGSALATGKGPTKGSSSSFGKPLTKANRDDRWCSYCRKSGHTKEKCFRLHGKEKSNPVLEAFGNAKTVRNDNSSRFGKFVEIQFNKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSNCYELVGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIKFAKSEETDSSVLEDEASRFHLQTTAELLMCDPNCLEGALRERVMITPEEIIKRSLDPLGATVSRDGLAKTLYSRLFDWLVQKINISIGQDPSSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLARSDFSVVHYAGEVQYQSEQFLDKNKDYVVPEHQDMLSASKCSFVSGLFAPLSEETAKSAKFSSIGSRFKLQLQQLMDALNLTEPHYIRCIKPNSLLKPFIFENMNVIQQLRSGGVLEAVRIKCAGFPTHWTFHDFLTRLGILAPEVLQGNFEEKDSCKKILEKIGLTGYQIGETQIFLRAGQMAELDARRAFLLSNSAIVIQKHTKTHFSQKRYIALQKSSVFLQSICRGELARRSYYHMKREAGAVRIQKYMRGTLARKWYTEIKISAIVLQTGFRAVAACNKFRYRKQISASTTIQSNWRRHKALSDYQNLRKASISSQTINHSSDKHEQKVFETPAQNESPSMEECSNPVQEESSSPFQDDESIEAIRDSSIPLKDTEKIEVLTIEIKNLKVMLQEEKQRGDEYERKYVEAQGSSEELRKKLAETEKRVHQLQDSLNRMISSMSSQVAELKAILSTSSRLSSTFRPIARVDIASSNSDTSSTDSDFTFPAPVSNTELLSSPESNSFQLVVQDVTAGDGSGSESGKEGSFDDFF*

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