Glyma10g03920 - SoyBase

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Report for Sequence Feature Glyma10g03920

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2918679
stop:	2924205
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06730	AT	Annotation by Michelle Graham. TAIR10: pfkB-like carbohydrate kinase family protein \| chr1:2067633-2070049 FORWARD LENGTH=488	SoyBase	E_val: 0	ISS
GO:0019303	GO-bp	Annotation by Michelle Graham. GO Biological Process: D-ribose catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG2855	KOG	Ribokinase	JGI		ISS
PTHR10584	Panther	SUGAR KINASE RELATED	JGI		ISS
PTHR10584:SF34	Panther	RIBOKINASE-RELATED	JGI		ISS
PF00294	PFAM	pfkB family carbohydrate kinase	JGI		ISS
UniRef100_B9S4U3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribokinase, putative n=1 Tax=Ricinus communis RepID=B9S4U3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L8B4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8B4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g03920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03920

Paralog	Evidence	Comments
Glyma13g18080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g034000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g03920

Limit To All Plant Sequences

>Glyma10g03920.1   sequence type=CDS   gene model=Glyma10g03920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCTCTCAGTCCCACCCAAAGCCCTCAATTCCCCAATCCATCATCCCCATGGACCCTCCTTCTCTTCCATTTCCAAACCAAAGCCAAAACCCAATGGGTTAACCCTTTTGCCTCTGAATCGCGCATTCAGAGGCCTCGAAATCTCCGTCCCTAGCCCCTCCTCGCTCCATTCAAACGTTGCCAAACACGTCGACGTTGCCACTCTGAGCAACCTCTGCGTCGACATCGTTCTCAATGTCCCCCAGTTGCCCCCTCCTTCCCCTCTTCAACGCAAGGCCTTCATGGACCGCTTGGCCCAATCTCCTCCTGACAAGAAATATTGGGAAGCAGGTGGAAACTGCAATATGGCTATAGCAGCTGCAAGGTTAGGACTCAACTGCATATCAATTGGTCATGTGGGTAATGAAATCTATGGGAAATTTCTGTCAGATGTGCTTCATGATGAGGGCATTGGTTTGGTTGGGATGATTACTAATGACGATATCGTCAACAGTTCTGGTAGTAGTGCCTCTTGTGAAACTCTTTTATGTTGGGTTCTTGTTGATCCTTTACAAAGACATGGTTTTTGCAGTCGGGCTGATTTTTGTGAGGAGCCTATATTGCATTGGATGAGTAAATTGTCCAGCGAAGTTAAAATGGCTATTAAAAACTCAAAGGTCTTGTTCTGTAATGGATATGGATTTGATGAGCTCTCTCCTGGTGCAATACTCTCAGCCATGGAATATGCTGTTGAAGTTGGCACCTCAATCTTCTTTGATCCTGGACCACGTGGAAAGAGTCTCTCCACTGGGACCCCAGATGAACAAAGAGCTCTTAATCAGTTACTGAGAATGAGTGATGTTCTTCTTCTAACTTCTGACGAGGCTGAGGAATTAACTGGCATAGAAGATCCAATATTAGCAGGGCAGGAGTTTCTCAAAAGAGGGATCCGCACAAAATGGGTGATTGTAAAAATGGGTTCTAAGGGTTCGATTCTTATAACAGCATCGAGTGTAGCTTGTGCACCTGCATTCAAGGTGAATGTTATTGACTCTGTCGGATGTGGAGACAGTTTTGTAGCTGCTATTGTCTATGGTTTTATACATAATATGCCACTGGTTAATACATTGGCAATTGCAAATGCAGTGGGTGCTGCAACAGCCATGGGCTGTGGTGCTGGTAGGAATGTAGCAACACTGGAGAATGTAGTAAATATATTAAGATCATCAAACCTCAACGAAGATGATGAATTTTGGATTGAAATATTTGAAAAGAATGTGGTTGCTCAGGAAATAACATATCTGTCAAATGTTATGAATGGAAACAAAAATCGTCTCAACCTTGTCTCATTTGACAAGGTTGCCTCTGAGCTCTTGCCCAAGCTTGAACTTCCACAAACAGTGGGGAATGTGCCAACTTGA

Predicted protein sequences of Glyma10g03920

Limit To All Plant Sequences

>Glyma10g03920.1   sequence type=predicted peptide   gene model=Glyma10g03920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLSVPPKALNSPIHHPHGPSFSSISKPKPKPNGLTLLPLNRAFRGLEISVPSPSSLHSNVAKHVDVATLSNLCVDIVLNVPQLPPPSPLQRKAFMDRLAQSPPDKKYWEAGGNCNMAIAAARLGLNCISIGHVGNEIYGKFLSDVLHDEGIGLVGMITNDDIVNSSGSSASCETLLCWVLVDPLQRHGFCSRADFCEEPILHWMSKLSSEVKMAIKNSKVLFCNGYGFDELSPGAILSAMEYAVEVGTSIFFDPGPRGKSLSTGTPDEQRALNQLLRMSDVLLLTSDEAEELTGIEDPILAGQEFLKRGIRTKWVIVKMGSKGSILITASSVACAPAFKVNVIDSVGCGDSFVAAIVYGFIHNMPLVNTLAIANAVGAATAMGCGAGRNVATLENVVNILRSSNLNEDDEFWIEIFEKNVVAQEITYLSNVMNGNKNRLNLVSFDKVASELLPKLELPQTVGNVPT*

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