Report for Sequence Feature Glyma10g03820
Feature Type: gene_model
Chromosome: Gm10
Start: 2862399
stop: 2866142
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g03820
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G30590 AT
Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 21 | chr2:13033891-13035303 FORWARD LENGTH=380
SoyBase E_val: 2.00E-121 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PF03106 PFAM
WRKY DNA -binding domain
JGI ISS
PF10533 PFAM
Plant zinc cluster domain
JGI ISS
UniRef100_B0LUS1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Glycine max RepID=B0LUS1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1L8A8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8A8_SOYBN
SoyBase E_val: 0 ISS
Proteins Associated with Glyma10g03820
Locus Gene Symbol Protein Name
WRKY127 WRKY Transcription Factor
Expression Patterns of Glyma10g03820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g03820
Paralog Evidence Comments
Glyma02g15920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g03820 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g032900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g03820
Transcripts of Glyma10g03820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g03820.2 sequence type=transcript gene model=Glyma10g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AACTAACTCCTCCTCTTTCTTCTTCTTCTTCTTCTTCTCTCTCTCGCAAGAGCTACAAACAAAATATAATAATAGTATTTTTTTTTCTTCTCTTCCTGCTTAGGACTTTAATTAATTATATAATATGTATATAGTCTAAAGTTGGAAGCTTTGTATTCTTGTGTATGATGGTTGTGTTGTGTGAGTTCTCAAGGGAAGCAAAGTCCTCTCTTTCACACCTTTCAGTCTCAAAACCGTGGGAAGAAGAATCTAGGGTTTAACAGCACCACCCCGAGTCCATCAAGGTCTGTGCTTTGATGCTTTTTTCTTCTTCTTTTTCACTGGGAAATTCGGTCGTTTTTTTTTTCTGAAGGAGGTTTTGCTGCAACTTGTGAGGCACCCTCAGTTTGTTCTGATTCCAAGGTTGTTCCTTGTTTCCAAAAAACATGCCTTTTTTTCTTCATGATTTAAAATTTTGAGACTTTAACCTGAAATCCTGTTTTTATGGCTCCTTGTCTGGTGAAAAAATGGGATTTTTTTCATCTGGGTCGTTTTATCTGCCACATAAGGCTGAATGTCTCATATGTTTGTGGATAAGTGGGGTGGTTTGTTAGTATTCTGGTGTTCCTTGGTTTGGTTTCTTTTTTCTTCCCTTTTTTTTATAAATTTTTTAGAGGCTAACATGGAGGAGGTTGAGCAAGCTAATAGAGTAGCTGTTGAAAGCTGCCATAGGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAATGGTGGAAACCGGTGAAACTGTGGTGAGGTTCAAGAAGGTTGTTTCCATGCTTCACAATGGTTTGGGTCATGCAAGAGTGAGGAAACTTAAAAACCCTCAAATCCCCTCTTCCCACCAAAGCATCTTCTTAGACAACCCCAATTGCAAAACCTTAACCAACAACAGCAACAACAACCATCACTCCAAAAAAAATCTATACTTTCCCCAAACCAGCTACCCTGACAATTCAGTTCAGGAACATGGTTCAACCATTAAGAATTCTCTCTCTCTTGGACAACCCTCTTTGGAATTGAGCTCCAATGGGAAAAGTCCTCTTCACCTCACACAGCAGGGTTCATCAAATCACTATCACTTCTTTCAGCAGCAGCAACAGCAAAGGTTGTTGCAGCAGCAGCAGCAACAACAACAAATGAAGCATCAAGCTGAAATGTTGTTCCGAAGGAACAATAGTGGCATAAACCTGAATTTTGACAGCACTAGCTGCACACCAACAATGTCATCCACTAAGTCTTTTATTTCTTCCTTGAGCATAGATGGAAGTGTGGCTAACTTGGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCGCAACAGCCTAAGAGAAAATGTTCTGCCAGAGGCGATGAGGGAAGCTTGAAATGTGGGAGCAGTGCTAGATGTCATTGCTCTAAGAAGAGGAAACATAGAGTGAAGAGGGCAATTAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATCCCTCCTGATGATTATTCGTGGAGGAAGTATGGACAGAAGCCAATCAAGGGCTCTCCTCACCCTAGGGGATATTACAAGTGCAGCAGCATGAGAGGGTGTCCTGCAAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTACCATGCTAATTGTCACCTATGAAGGTGAACATAACCACCCCAAGTTACCAACACAATCTGCAAATGCATGAAACTATGTGGAGAGCTTAACCAGATCAAGCCAATCATTCAATTCGTCAAATCCTCTATGTGATTGGCTTGAGATGCTGCTGTACATATTTTTAGTGATGCAAACAAGCAGGGATGGATAATATTGTTGGCGCAGATTTTGTCTTTTGGATAGTTTGGCTATCCAGCCGTTTTATTTAGAGGGTTTGAATATTTATGGATGAAGTTTGCAGGATTGAATATTTATGGATGGTTCCATAATGAGTGCCTCAATAGCAATTATTAGGATAAGGTGATAAGTGATATACTTTTGTATGTTACAACAGCCTGGGCCAATTCAAGGAAAAAACATGGTATGGCACCTGCTAGTGATAATGGATGGCAACAAAGTTTGGTAACTACCGATATTCCTTTTCATCTACTACTTCGTAGGTTGAAGCTGTTTTAGGACCATCAAGTCCCTCGATGGAACATGGATGTCGTGTAATAATTTCAAAGTTGGACTTTTTTTTAACAGGGTGAAATGAATGGCACACCCTCTCCTTGATTTGCACTATCTACATGCAAAGTTTCATTCGGTTTGTTACTTCTCCTAATAGAAAGTGTATCTTGGCTTATGGAAGTTTCTCAGCAGAGCATGTGAGTTGTGAGGGGGGACCAATATGGGCATTCATGCTCGATCATTGTTTTCTCGGGTCCAATACCAACTGTGTTATCAACGTTATTAGAGAATAAATTCCATCTTTTGCCTTCAGTGCCCATGAACCATTGGCATTTTATAATCAATTACTGCTTCCAATATTATAAAAACAAAAATTAAGGGACGGGGAAAATATACTTGGATTATTGGCTACATTTTAGTATTAAGTGATTAGGATCAAGTATCAAATAGTTTAGTCTCTTGTAAATGATCTATAATTGGAAAAGGGGTGTTACTAAACATTCTAGACATATATACTAAAAACTTCAGTTATTGTGTAAAAGACTCAATCGTGATAATTA
Coding sequences of Glyma10g03820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g03820.1 sequence type=CDS gene model=Glyma10g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTCATATGTTTGTGGATAAGTGGGGTGGTTTGTTAGTATTCTGGTGTTCCTTGGTTTGGTTTCTTTTTTCTTCCCTTTTTTTTATAAATTTTTTAGAGGCTAACATGGAGGAGGTTGAGCAAGCTAATAGAGTAGCTGTTGAAAGCTGCCATAGGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAATGGTGGAAACCGGTGAAACTGTGGTGAGGTTCAAGAAGGTTGTTTCCATGCTTCACAATGGTTTGGGTCATGCAAGAGTGAGGAAACTTAAAAACCCTCAAATCCCCTCTTCCCACCAAAGCATCTTCTTAGACAACCCCAATTGCAAAACCTTAACCAACAACAGCAACAACAACCATCACTCCAAAAAAAATCTATACTTTCCCCAAACCAGCTACCCTGACAATTCAGTTCAGGAACATGGTTCAACCATTAAGAATTCTCTCTCTCTTGGACAACCCTCTTTGGAATTGAGCTCCAATGGGAAAAGTCCTCTTCACCTCACACAGCAGGGTTCATCAAATCACTATCACTTCTTTCAGCAGCAGCAACAGCAAAGGTTGTTGCAGCAGCAGCAGCAACAACAACAAATGAAGCATCAAGCTGAAATGTTGTTCCGAAGGAACAATAGTGGCATAAACCTGAATTTTGACAGCACTAGCTGCACACCAACAATGTCATCCACTAAGTCTTTTATTTCTTCCTTGAGCATAGATGGAAGTGTGGCTAACTTGGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCGCAACAGCCTAAGAGAAAATGTTCTGCCAGAGGCGATGAGGGAAGCTTGAAATGTGGGAGCAGTGCTAGATGTCATTGCTCTAAGAAGAGGAAACATAGAGTGAAGAGGGCAATTAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATCCCTCCTGATGATTATTCGTGGAGGAAGTATGGACAGAAGCCAATCAAGGGCTCTCCTCACCCTAGGGGATATTACAAGTGCAGCAGCATGAGAGGGTGTCCTGCAAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTACCATGCTAATTGTCACCTATGAAGGTGAACATAACCACCCCAAGTTACCAACACAATCTGCAAATGCATGA
>Glyma10g03820.2 sequence type=CDS gene model=Glyma10g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTCATATGTTTGTGGATAAGTGGGGTGGTTTGTTAGTATTCTGGTGTTCCTTGGTTTGGTTTCTTTTTTCTTCCCTTTTTTTTATAAATTTTTTAGAGGCTAACATGGAGGAGGTTGAGCAAGCTAATAGAGTAGCTGTTGAAAGCTGCCATAGGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAATGGTGGAAACCGGTGAAACTGTGGTGAGGTTCAAGAAGGTTGTTTCCATGCTTCACAATGGTTTGGGTCATGCAAGAGTGAGGAAACTTAAAAACCCTCAAATCCCCTCTTCCCACCAAAGCATCTTCTTAGACAACCCCAATTGCAAAACCTTAACCAACAACAGCAACAACAACCATCACTCCAAAAAAAATCTATACTTTCCCCAAACCAGCTACCCTGACAATTCAGTTCAGGAACATGGTTCAACCATTAAGAATTCTCTCTCTCTTGGACAACCCTCTTTGGAATTGAGCTCCAATGGGAAAAGTCCTCTTCACCTCACACAGCAGGGTTCATCAAATCACTATCACTTCTTTCAGCAGCAGCAACAGCAAAGGTTGTTGCAGCAGCAGCAGCAACAACAACAAATGAAGCATCAAGCTGAAATGTTGTTCCGAAGGAACAATAGTGGCATAAACCTGAATTTTGACAGCACTAGCTGCACACCAACAATGTCATCCACTAAGTCTTTTATTTCTTCCTTGAGCATAGATGGAAGTGTGGCTAACTTGGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCGCAACAGCCTAAGAGAAAATGTTCTGCCAGAGGCGATGAGGGAAGCTTGAAATGTGGGAGCAGTGCTAGATGTCATTGCTCTAAGAAGAGGAAACATAGAGTGAAGAGGGCAATTAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATCCCTCCTGATGATTATTCGTGGAGGAAGTATGGACAGAAGCCAATCAAGGGCTCTCCTCACCCTAGGGGATATTACAAGTGCAGCAGCATGAGAGGGTGTCCTGCAAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTACCATGCTAATTGTCACCTATGAAGGTGAACATAACCACCCCAAGTTACCAACACAATCTGCAAATGCATGA
Predicted protein sequences of Glyma10g03820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g03820.1 sequence type=predicted peptide gene model=Glyma10g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSHMFVDKWGGLLVFWCSLVWFLFSSLFFINFLEANMEEVEQANRVAVESCHRVLSLLSQPRDQVQHRNLMVETGETVVRFKKVVSMLHNGLGHARVRKLKNPQIPSSHQSIFLDNPNCKTLTNNSNNNHHSKKNLYFPQTSYPDNSVQEHGSTIKNSLSLGQPSLELSSNGKSPLHLTQQGSSNHYHFFQQQQQQRLLQQQQQQQQMKHQAEMLFRRNNSGINLNFDSTSCTPTMSSTKSFISSLSIDGSVANLDGSAFHLIGAPHSSDQNSQQPKRKCSARGDEGSLKCGSSARCHCSKKRKHRVKRAIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSANA*
>Glyma10g03820.2 sequence type=predicted peptide gene model=Glyma10g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSHMFVDKWGGLLVFWCSLVWFLFSSLFFINFLEANMEEVEQANRVAVESCHRVLSLLSQPRDQVQHRNLMVETGETVVRFKKVVSMLHNGLGHARVRKLKNPQIPSSHQSIFLDNPNCKTLTNNSNNNHHSKKNLYFPQTSYPDNSVQEHGSTIKNSLSLGQPSLELSSNGKSPLHLTQQGSSNHYHFFQQQQQQRLLQQQQQQQQMKHQAEMLFRRNNSGINLNFDSTSCTPTMSSTKSFISSLSIDGSVANLDGSAFHLIGAPHSSDQNSQQPKRKCSARGDEGSLKCGSSARCHCSKKRKHRVKRAIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSANA*