Glyma10g03780 - SoyBase

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Report for Sequence Feature Glyma10g03780

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2816460
stop:	2822478
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30580	AT	Annotation by Michelle Graham. TAIR10: DREB2A-interacting protein 2 \| chr2:13026444-13030363 FORWARD LENGTH=420	SoyBase	E_val: 7.00E-139	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0051865	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autoubiquitination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG2660	KOG	Locus-specific chromosome binding proteins	JGI		ISS
PTHR10825	Panther	RING FINGER PROTEIN	JGI		ISS
PTHR10825:SF3	Panther	RING FINGER PROTEIN	JGI		ISS
UniRef100_B9S4T4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9S4T4_RICCO	SoyBase	E_val: 7.00E-140	ISS
UniRef100_I1L8A4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L8A4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g03780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03780

Paralog	Evidence	Comments
Glyma02g15980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g032500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g03780

Limit To All Plant Sequences

>Glyma10g03780.1   sequence type=CDS   gene model=Glyma10g03780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGAAGAGGTTGGTGAAAGTGAAGAGGGATGCGATTGCAGCATGCATGACTTGCCCGCTCTGCAATAAGTTCCTCAAAGAAGCCACTGCTATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTATGACAAAATTGCAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTCGAGAAAATGAGGCCAGATAACATTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAAAAAAAGAAAGGAGAAGGCACCTGTATCTGTCTCCTCAGCACTATTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATGTACACAGTCAACCATGACAGGAAGAAGAACAAAACCTGCAAGAAAGGCTAGTGGCCTGCAGGGATCTAGTTTCTCCATTGAGAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCACCAAGATAATTCATGCTCGCCTGACACTTCAAACAAGTCTGCTAAGAATGGTGGGCAGAGTTTGTCACCTTGTAAAAATAGCCAATCCATATGCAATAGAGAACCACAGAATGGTGCTGAACCACACGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGCCTTTTAAGTCTAATGTGCAAGCATCTGATGCTAAACTAGAATCCATGAAAGTGACTGACAGTGATGCTAAAGTGCTGAAAGCCAAAATTAAGGAAAAGAAGCGCAAGGCAAAAGTCGAAGATGAAAAGATTATCACTGATCATGTCTCTTCTGATACAGCAAAACCCAACAAATTGCGAAGAGTTCGCCCAAGAAAGGAACCTGTTTTTGGAGAATCTAGAATATCACCTCAGGCTGTTCTGGATGCTACTGACAGAAATCTCTTATGGAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCGCAAATTCCTTCAAATTATGTAAGAATAAAGAATGGAAGCATACCTGTCTCGTTTATCCAAAAATTATTAATGAAGAAACTAGGCCTGAATAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCAGTGCTTCCTTCACTGCAGGTGCAAAACTTGGTTGACTCGTGGCTTGATATGGCGGCTTCAGGACATAGAATTCCAGCAACCATTGGATCCTCGGGGAAAGATTTTGTCATGATCCTAACCTATGGTCGGAAGGTCCTACACCCTTGA

Predicted protein sequences of Glyma10g03780

Limit To All Plant Sequences

>Glyma10g03780.1   sequence type=predicted peptide   gene model=Glyma10g03780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMKRLVKVKRDAIAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKIADEELENCPVCNIDLGIVPLEKMRPDNILQDLRNKIFPFKKRKEKAPVSVSSALLPARRKERSLSSLVVSTPRVCTQSTMTGRRTKPARKASGLQGSSFSIEKLIKKEEELLEDHQDNSCSPDTSNKSAKNGGQSLSPCKNSQSICNREPQNGAEPHEAKWDLWKTLNYLAEAASRSKPFKSNVQASDAKLESMKVTDSDAKVLKAKIKEKKRKAKVEDEKIITDHVSSDTAKPNKLRRVRPRKEPVFGESRISPQAVLDATDRNLLWNDSIWFSLAASENQEGDAPLPQIPSNYVRIKNGSIPVSFIQKLLMKKLGLNSEDEVEIKCMGHPVLPSLQVQNLVDSWLDMAASGHRIPATIGSSGKDFVMILTYGRKVLHP*

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