Glyma10g03680 - SoyBase

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Report for Sequence Feature Glyma10g03680

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2740531
stop:	2744126
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43680	AT	Annotation by Michelle Graham. TAIR10: unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages. \| chr5:17544074-17545354 FORWARD LENGTH=232	SoyBase	E_val: 4.00E-53	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
UniRef100_G7ICN2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sec-independent protein translocase protein tatB-like protein n=1 Tax=Medicago truncatula RepID=G7ICN2_MEDTR	SoyBase	E_val: 3.00E-110	ISS
UniRef100_I1L890	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L890_SOYBN	SoyBase	E_val: 2.00E-162	ISS

Expression Patterns of Glyma10g03680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03680

Paralog	Evidence	Comments
Glyma02g16123	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g031500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g03680

Limit To All Plant Sequences

>Glyma10g03680.4   sequence type=transcript   gene model=Glyma10g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTACTTCTCTATCGTACACGCGCGGGATTATGAAGCAAAAATTACGCGCGGGTTTTACTCTCGTGTACCTCTCTCGCTGCAACGCTCAATCTCTCGACTGGTGCTCGTTGCTCACTTTCTCTGTTCTTCACAATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCGTTGGGTTAAGGACTAGAGAATTTCCATAGGACTTCAAGAAGACAGTGGGCAATGCTGGGCTTTTCATATGGAGAAATATTTCTGTTGCTTGGAGCTACTGCTGCTCTGATAGGGCCAAAGGATTTACCAATCATATGCAGAACAGCAGGAAGGCTAGCTGGTCGAGCTATTGGATATGTACAATTGGCTCGTGGTCAGTTTGACACTGTTATGCAGCAATCTCAAGCTCGCCAGGTTCATAAGGAACTGCAAGACACAATGGCTCAGCTAGATGCCATTCGCCATGAAATTCGAAGTATATCAATCATAAATCCTGGCCCTTTGACGCGGAGGCTTGTGGATGATCCTGACCAGACATCTATCTCAAATGAAAGTAGGAAACCAGAAGAATCTGGACAAGAGAATAGCTCGATACCCACTGTTATGAAGGATTCAACTTCAATGTCATCCAATTCATGCCATATGCAAAATCAAGCAACCATTTATTCCAGATTGGTAAACTCCCCTGCCATAAAAAATGAGTTGTCAGCAAGTAGTACCGAAGTTGAGAAGATAGAAGATAAACTACAGCTTACTGTCTTACCAATTTCTGCTGAAAATGCTGGACTATTACCAATTCGTGGGGCTGATGTGAAAGGATCTGACATAGTTCTTGAAGCAATTGTGGAGGCAGAGGTCGCTCATAATGCAAAGGAATTCTTTTCACAGCCCCAAAATCAAATATGATTGATATGGTAATCCTACATAGTACCTTAATTTTCTAGATGTTAAAGTTTGTGGCATTTGTAAATACAAAATAATAGGTTGTACCTTATATTTGTAGGTATTGATTCTTGTTTTTTCTTTTCAAGTTCAGGCTAGAAAATCTGTCGGAGTCTTTGGGTTCAAGAGATTATTAATTTTTTCTGATTTGAAGTGTTTCCTCACTCAACCTTCCCCACTTTCCCCTCGATAATAAAACAAAACCCTCAAGCTAGTCTCCTTAACGAATAACGAGGTTATGACAAACTATTTGTATAAAGTTTTCTGCTATCTTCTATTTGCTGTATGGTTGATGGTTGAGCATGCATTAAAAAAAATAAGAATTTTGAATTTGAATATAAAATATTTGATA

Coding sequences of Glyma10g03680

Limit To All Plant Sequences

>Glyma10g03680.3   sequence type=CDS   gene model=Glyma10g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGGCTTTTCATATGGAGAAATATTTCTGTTGCTTGGAGCTACTGCTGCTCTGATAGGGCCAAAGGATTTACCAATCATATGCAGAACAGCAGGAAGGCTAGCTGGTCGAGCTATTGGATATGTACAATTGGCTCGTGGTCAGTTTGACACTGTTATGCAGCAATCTCAAGCTCGCCAGGTTCATAAGGAACTGCAAGACACAATGGCTCAGCTAGATGCCATTCGCCATGAAATTCGAAGTATATCAATCATAAATCCTGGCCCTTTGACGCGGAGGCTTGTGGATGATCCTGACCAGACATCTATCTCAAATGAAAGTAGGAAACCAGAAGAATCTGGACAAGAGAATAGCTCGATACCCACTGTTATGAAGGATTCAACTTCAATGTCATCCAATTCATGCCATATGCAAAATCAAGCAACCATTTATTCCAGATTGGTAAACTCCCCTGCCATAAAAAATGAGTTGTCAGCAAGTAGTACCGAAGTTGAGAAGATAGAAGATAAACTACAGCTTACTGTCTTACCAATTTCTGCTGAAAATGCTGGACTATTACCAATTCGTGGGGCTGATGTGAAAGGATCTGACATAGTTCTTGAAGCAATTGTGGAGGCAGAGGTCGCTCATAATGCAAAGGAATTCTTTTCACAGCCCCAAAATCAAATATGA

>Glyma10g03680.4   sequence type=CDS   gene model=Glyma10g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGGCTTTTCATATGGAGAAATATTTCTGTTGCTTGGAGCTACTGCTGCTCTGATAGGGCCAAAGGATTTACCAATCATATGCAGAACAGCAGGAAGGCTAGCTGGTCGAGCTATTGGATATGTACAATTGGCTCGTGGTCAGTTTGACACTGTTATGCAGCAATCTCAAGCTCGCCAGGTTCATAAGGAACTGCAAGACACAATGGCTCAGCTAGATGCCATTCGCCATGAAATTCGAAGTATATCAATCATAAATCCTGGCCCTTTGACGCGGAGGCTTGTGGATGATCCTGACCAGACATCTATCTCAAATGAAAGTAGGAAACCAGAAGAATCTGGACAAGAGAATAGCTCGATACCCACTGTTATGAAGGATTCAACTTCAATGTCATCCAATTCATGCCATATGCAAAATCAAGCAACCATTTATTCCAGATTGGTAAACTCCCCTGCCATAAAAAATGAGTTGTCAGCAAGTAGTACCGAAGTTGAGAAGATAGAAGATAAACTACAGCTTACTGTCTTACCAATTTCTGCTGAAAATGCTGGACTATTACCAATTCGTGGGGCTGATGTGAAAGGATCTGACATAGTTCTTGAAGCAATTGTGGAGGCAGAGGTCGCTCATAATGCAAAGGAATTCTTTTCACAGCCCCAAAATCAAATATGA

Predicted protein sequences of Glyma10g03680

Limit To All Plant Sequences

>Glyma10g03680.3   sequence type=predicted peptide   gene model=Glyma10g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGFSYGEIFLLLGATAALIGPKDLPIICRTAGRLAGRAIGYVQLARGQFDTVMQQSQARQVHKELQDTMAQLDAIRHEIRSISIINPGPLTRRLVDDPDQTSISNESRKPEESGQENSSIPTVMKDSTSMSSNSCHMQNQATIYSRLVNSPAIKNELSASSTEVEKIEDKLQLTVLPISAENAGLLPIRGADVKGSDIVLEAIVEAEVAHNAKEFFSQPQNQI*

>Glyma10g03680.4   sequence type=predicted peptide   gene model=Glyma10g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGFSYGEIFLLLGATAALIGPKDLPIICRTAGRLAGRAIGYVQLARGQFDTVMQQSQARQVHKELQDTMAQLDAIRHEIRSISIINPGPLTRRLVDDPDQTSISNESRKPEESGQENSSIPTVMKDSTSMSSNSCHMQNQATIYSRLVNSPAIKNELSASSTEVEKIEDKLQLTVLPISAENAGLLPIRGADVKGSDIVLEAIVEAEVAHNAKEFFSQPQNQI*

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