Glyma10g03640 - SoyBase

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Report for Sequence Feature Glyma10g03640

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2706857
stop:	2708683
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54560	AT	Annotation by Michelle Graham. TAIR10: histone H2A 11 \| chr3:20196532-20197466 FORWARD LENGTH=136	SoyBase	E_val: 7.00E-79	ISS
GO:0006338	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin remodeling	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010468	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression	SoyBase	N/A	ISS
GO:0016048	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of temperature stimulus	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0044030	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA methylation	SoyBase	N/A	ISS
GO:0000786	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleosome	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1757	KOG	Histone 2A	JGI		ISS
PTHR23430	Panther	HISTONE H2A	JGI		ISS
PF00125	PFAM	Core histone H2A/H2B/H3/H4	JGI		ISS
UniRef100_C6SYX2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Histone H2A n=1 Tax=Glycine max RepID=C6SYX2_SOYBN	SoyBase	E_val: 9.00E-91	ISS
UniRef100_C6SYX2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Histone H2A n=1 Tax=Glycine max RepID=C6SYX2_SOYBN	SoyBase	E_val: 9.00E-91	ISS

Expression Patterns of Glyma10g03640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03640

Paralog	Evidence	Comments
Glyma02g16150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g031200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g03640

Limit To All Plant Sequences

>Glyma10g03640.4   sequence type=transcript   gene model=Glyma10g03640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAATTGGGAATGAAAAGTGTTTTCCCACGCAAGGTTGCGCGCCTCTCGATTTGAGAAAATTGAGAATTCAAAGTTCAAACATAACACATACCACATTTAATGACATCATAGGCACCCATTTGGATCTAATCCTCAGAATCAGCTTCAGCCTTTCTCTCTAACTCCCTCACTCACACTCACAGTTAAGCAATGGCGGGGAAAGGAGGAAAGGGGCTTCTTGCAGCGAAAACCACCGCGGCTAACAAGGACAAAGACAAGGACAAGAAGAGACCTATTTCTCGTTCATCTCGTGCCGGAATCCAGTTTCCTGTGGGACGTATCCATAGGCAGCTGAAACAAAGGGTCCAAGCTAATGGACGTGTTGGTGCCACTGCTGCCGTATACTTAGCCTCAATTCTTGAGTATCTTACTGCTGAAGTTCTTGAACTTGCTGGGAATGCAAGCAAGGATCTGAAGGTGAAAAGGATAACACCAAGGCATTTGCAGCTTGCTATCAGAGGAGATGAGGAGTTGGACACCCTTATTAAAGGGACCATTGCTGGTGGTGGTGTCATTCCTCACATCCACAAGTCCTTGATCAACAAAACAGCCAAGGATTGAGCTCGCTCTTTGGCCTTCTGATTTCATGTTGCTGTTTACTGAGAACTAAGTTTGTGTTTATTGTGAATTGATCACAGTAGTAGGTTTGTATGAATGATTTATTTTAACAGTTTTATAACTCAGGTTGTAGTGTGTACATGGCTTGCTAGACAATGCTTTCTTTAACTATTTTAATGGGTCTGTTGTTAGAGCTTTAACCATGTTGGATTGCTTGCTAGACAATGCTTGCTTTTAGGTGCAATCTGTGATTTGTTGTTGTCTTTGTTGGCAATTGACCCCTCACCCCTTCATATATGGTTTTTCTAACTTTAATCTTGCGATCTGTGACCTGT

Coding sequences of Glyma10g03640

Limit To All Plant Sequences

>Glyma10g03640.3   sequence type=CDS   gene model=Glyma10g03640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGGGAAAGGAGGAAAGGGGCTTCTTGCAGCGAAAACCACCGCGGCTAACAAGGACAAAGACAAGGACAAGAAGAGACCTATTTCTCGTTCATCTCGTGCCGGAATCCAGTTTCCTGTGGGACGTATCCATAGGCAGCTGAAACAAAGGGTCCAAGCTAATGGACGTGTTGGTGCCACTGCTGCCGTATACTTAGCCTCAATTCTTGAGTATCTTACTGCTGAAGTTCTTGAACTTGCTGGGAATGCAAGCAAGGATCTGAAGGTGAAAAGGATAACACCAAGGCATTTGCAGCTTGCTATCAGAGGAGATGAGGAGTTGGACACCCTTATTAAAGGGACCATTGCTGGTGGTGGTGTCATTCCTCACATCCACAAGTCCTTGATCAACAAAACAGCCAAGGATTGA

>Glyma10g03640.4   sequence type=CDS   gene model=Glyma10g03640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGGGAAAGGAGGAAAGGGGCTTCTTGCAGCGAAAACCACCGCGGCTAACAAGGACAAAGACAAGGACAAGAAGAGACCTATTTCTCGTTCATCTCGTGCCGGAATCCAGTTTCCTGTGGGACGTATCCATAGGCAGCTGAAACAAAGGGTCCAAGCTAATGGACGTGTTGGTGCCACTGCTGCCGTATACTTAGCCTCAATTCTTGAGTATCTTACTGCTGAAGTTCTTGAACTTGCTGGGAATGCAAGCAAGGATCTGAAGGTGAAAAGGATAACACCAAGGCATTTGCAGCTTGCTATCAGAGGAGATGAGGAGTTGGACACCCTTATTAAAGGGACCATTGCTGGTGGTGGTGTCATTCCTCACATCCACAAGTCCTTGATCAACAAAACAGCCAAGGATTGA

Predicted protein sequences of Glyma10g03640

Limit To All Plant Sequences

>Glyma10g03640.3   sequence type=predicted peptide   gene model=Glyma10g03640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGKGGKGLLAAKTTAANKDKDKDKKRPISRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKD*

>Glyma10g03640.4   sequence type=predicted peptide   gene model=Glyma10g03640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGKGGKGLLAAKTTAANKDKDKDKKRPISRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKD*

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