Glyma10g03621 - SoyBase

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Report for Sequence Feature Glyma10g03621

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2683376
stop:	2686630
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03621

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63430	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 135 Blast hits to 119 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 3; Plants - 119; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). \| chr3:23420414-23422201 FORWARD LENGTH=540	SoyBase	E_val: 1.00E-67	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q2R1Y3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2R1Y3_ORYSJ	SoyBase	E_val: 2.00E-64	ISS
UniRef100_UPI000233C7FC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C7FC related cluster n=1 Tax=unknown RepID=UPI000233C7FC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g03621

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g03621 not represented in the dataset	Glyma10g03621 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03621

Paralog	Evidence	Comments
Glyma02g16181	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03621 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g031000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03621

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g03621

Limit To All Plant Sequences

>Glyma10g03621.2   sequence type=transcript   gene model=Glyma10g03621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAATGCACCATCCCAATCCCATATCATGAGACTGTGTAGTTAGTTAGTAGTGAAAAAATGAAAATGGAACAAGAGGTTTCAGTTTCACACTCAACACAAACCCAAAGCCCCAAAACAGAGTAAAAGAAAAAATGACGACGGCTATCGTACGCGACCAGAACCTGGAGAAACACATTCACAAACAGATGGGGTGCATGGCTGGTTTCCTTCAGATCTTCGATCGCCACCAGATACTCACCGGAAAACGCATCTACTCCCACAAACGCCTCCCTCCGGCCTCGCCGGAGCCGGAAAAACCCGCCGCCTCACCGACGCGTTCAACGCCATCGCCGCCCAGAGAGGTCGTGAGTTCAGAGCCCAAGGCGAGTGTCCCCACTCTCCCCGTTCTCGAATTCAAAGAAGGCACGCGGTCCTCGTGGAAGTTCGCGAGAGAAGCTCCGAGGCTGTCCCTTGACAGCAGAGCCATCGTGGACGCGAAAGGAACGCTACACCTTCACCCGCGCGGCGAGATCCCTCCCGAAAACGACGCTGACAAGCAGCGTCGTTCCACCAGTGTCATTGCCAAGCTCATGGGCCTTGAGCCCTTACCAGATTCGGAGCCCGAGCCCGGGCCTGGGCCCGTGGCCAAGCTCCAGAGATCCGCGTCCGAGTCCAGAGTCCCCAGAGATCTGCCTCTGCCCCTAACGCAGTGTCGTTTCTTCGACCCCAACAATTTTACCGCTCAGGTCACAACCAATGTGGTTCACGAGAATAATAATAATAATAATAATAATAACAGTTATTATACTAACAACAACGCTGTCATCGATTCACGATTCGTTAGCAGCAGAGTCGCCGCAGATCCACCGAAACAGAGGTTAAAGAAGAGTTTCTACGACTCTGCCGATTTCTTCCCCGAGCCAAAACACACCGTTTCGGTGTACGGAGAGATTGAGAGGAGGCTGCGGGTGCGTGGGATAAACGAGCCTTCCAAGGATCTCCACACTCTGAAACACATCTTGGAAGCCTTGCAGCTCAAGGGGCTTTTGCATAACAGCACCAAACCAAACCAATCTCCCATTGTGGTTATGAAACCGGTTCGATCTGTGAATCGGACCGGGAGTGATTATTCTCCCCGGTCCAGTCCTCGCCGGAGCCCCAGAGTTGGCAACGAGGCTCGGAGGAGTGAACAAAATGAACGGAATGTAAGGGGGCAAGGTAGAACACAGAGTTCGAGTCCGAACCGTAGGAAGCAGGAACCGCAGAGGAGAGTGGGTGTTGATTCGAGGAGGGTGTCTGTTTCTGTGTCTCCGGTTCATTCGCCCAAGGTGAGTCCCAGAAGGAATGCAAATGCAACGGGTCAGCAAGTGCCAAGTGGGTCGCCCAGGATGATGATGAGAAAAAATAATGAGCGTAAGGAGAAGGTGTTGTTGGGTGGGGCAGAGGATGAATCGTCCACCATTTCAGACAACAGCTTCAGCACTAGTTCATATCCCGATACAGAGAGGTACAGGTTGGAAGAGTACAAGGAAGGGAAAGATCTGCTGGATAGGTGCGATAAGCTTCTCAACAGCATAGCAGAAATAACAGCTGCCAACGAGTTGCAACCGAGTCCAGTATCGGTTCTTGACTCGTCATTTTACAAGGATGACTGGTCTTCACCATCCCCGATAACAAAACGCTACATTGATTACAAAGATCAAGCGGCGGAGTCGGAAGATGATATGTGGAGTGCAGCATTGTGCAGCAGCGAGGAGGCAGCGTCCGAGGATTGTGATTTCGCTTACGTGTCGGAGATTCTGCGAGCTTGCACTTACTTGCCGGAAGACAGTGACATTTTTCTGTTACTGGAGAAGCAGCAATGTTTAAAGGGGAAAGATACCTCGAAGGCTTCGACGCTGCAGAGGCGGTTGATTTTCGACACTCTTCAGGAGATCCTGAACCGGAACCAGCAATTGCCGCCGTGGAAGGCGGTGTCGTACGGCGAACAGAGGCAGCAGATCTGGTCGGAGTTTCGGAGGATCCGAGAGAGGGAGGAATCGTGGGAGTCGGAGGACTTGTTTAAGGTGATATGCGGAGTGTTGAAGAAGGACATGGCGGATGAGATGCGAGGGTGGGGAGAATGGCCGGTGGAGATGGGAGATGTCGTGTTGGACATCGAACGTCTTGTGTTTAAGGATCTTGTTGGCGAAACCATTCGAGAACTCGCTTCGTTTTCACCTCAATCTCAATGTAACAACAAGCTACTACTACCCTCGCTTCGTAGGAAACTTGTCTTTTGAATTTCCAATCACAAACATCAAAAACAAAACGAGAAAAAGAAAGAGAGTCGCACGCATTGTTTAAATCTTCGCGCGCTTGCCTTTTTAATTTTTCTTTTCTTTTCTTTTTTGGCTTGCTTTATTATGATTTTTACTTTTAGTTTCTGTCAATGAAATCAGGAAATTTTTAATCTGAAATCTAGGCAAAATCTGACCTTGGCTTTCTTCAATATAGAGATGAATGAATGAAGTGTTGGCCT

Coding sequences of Glyma10g03621

Limit To All Plant Sequences

>Glyma10g03621.1   sequence type=CDS   gene model=Glyma10g03621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGACGGCTATCGTACGCGACCAGAACCTGGAGAAACACATTCACAAACAGATGGGGTGCATGGCTGGTTTCCTTCAGATCTTCGATCGCCACCAGATACTCACCGGAAAACGCATCTACTCCCACAAACGCCTCCCTCCGGCCTCGCCGGAGCCGGAAAAACCCGCCGCCTCACCGACGCGTTCAACGCCATCGCCGCCCAGAGAGGTCGTGAGTTCAGAGCCCAAGGCGAGTGTCCCCACTCTCCCCGTTCTCGAATTCAAAGAAGGCACGCGGTCCTCGTGGAAGTTCGCGAGAGAAGCTCCGAGGCTGTCCCTTGACAGCAGAGCCATCGTGGACGCGAAAGGAACGCTACACCTTCACCCGCGCGGCGAGATCCCTCCCGAAAACGACGCTGACAAGCAGCGTCGTTCCACCAGTGTCATTGCCAAGCTCATGGGCCTTGAGCCCTTACCAGATTCGGAGCCCGAGCCCGGGCCTGGGCCCGTGGCCAAGCTCCAGAGATCCGCGTCCGAGTCCAGAGTCCCCAGAGATCTGCCTCTGCCCCTAACGCAGTGTCGTTTCTTCGACCCCAACAATTTTACCGCTCAGGTCACAACCAATGTGGTTCACGAGAATAATAATAATAATAATAATAATAACAGTTATTATACTAACAACAACGCTGTCATCGATTCACGATTCGTTAGCAGCAGAGTCGCCGCAGATCCACCGAAACAGAGGTTAAAGAAGAGTTTCTACGACTCTGCCGATTTCTTCCCCGAGCCAAAACACACCGTTTCGGTGTACGGAGAGATTGAGAGGAGGCTGCGGGTGCGTGGGATAAACGAGCCTTCCAAGGATCTCCACACTCTGAAACACATCTTGGAAGCCTTGCAGCTCAAGGGGCTTTTGCATAACAGCACCAAACCAAACCAATCTCCCATTGTGGTTATGAAACCGGTTCGATCTGTGAATCGGACCGGGAGTGATTATTCTCCCCGGTCCAGTCCTCGCCGGAGCCCCAGAGTTGGCAACGAGGCTCGGAGGAGTGAACAAAATGAACGGAATGTAAGGGGGCAAGGTAGAACACAGAGTTCGAGTCCGAACCGTAGGAAGCAGGAACCGCAGAGGAGAGTGGGTGTTGATTCGAGGAGGGTGTCTGTTTCTGTGTCTCCGGTTCATTCGCCCAAGGTGAGTCCCAGAAGGAATGCAAATGCAACGGGTCAGCAAGTGCCAAGTGGGTCGCCCAGGATGATGATGAGAAAAAATAATGAGCGTAAGGAGAAGGTGTTGTTGGGTGGGGCAGAGGATGAATCGTCCACCATTTCAGACAACAGCTTCAGCACTAGTTCATATCCCGATACAGAGGTAAGGTACAGGTTGGAAGAGTACAAGGAAGGGAAAGATCTGCTGGATAGGTGCGATAAGCTTCTCAACAGCATAGCAGAAATAACAGCTGCCAACGAGTTGCAACCGAGTCCAGTATCGGTTCTTGACTCGTCATTTTACAAGGATGACTGGTCTTCACCATCCCCGATAACAAAACGCTACATTGATTACAAAGATCAAGCGGCGGAGTCGGAAGATGATATGTGGAGTGCAGCATTGTGCAGCAGCGAGGAGGCAGCGTCCGAGGATTGTGATTTCGCTTACGTGTCGGAGATTCTGCGAGCTTGCACTTACTTGCCGGAAGACAGTGACATTTTTCTGTTACTGGAGAAGCAGCAATGTTTAAAGGGGAAAGATACCTCGAAGGCTTCGACGCTGCAGAGGCGGTTGATTTTCGACACTCTTCAGGAGATCCTGAACCGGAACCAGCAATTGCCGCCGTGGAAGGCGGTGTCGTACGGCGAACAGAGGCAGCAGATCTGGTCGGAGTTTCGGAGGATCCGAGAGAGGGAGGAATCGTGGGAGTCGGAGGACTTGTTTAAGGTGATATGCGGAGTGTTGAAGAAGGACATGGCGGATGAGATGCGAGGGTGGGGAGAATGGCCGGTGGAGATGGGAGATGTCGTGTTGGACATCGAACGTCTTGTGTTTAAGGATCTTGTTGGCGAAACCATTCGAGAACTCGCTTCGTTTTCACCTCAATCTCAATGTAACAACAAGCTACTACTACCCTCGCTTCGTAGGAAACTTGTCTTTTGA

>Glyma10g03621.2   sequence type=CDS   gene model=Glyma10g03621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGACGGCTATCGTACGCGACCAGAACCTGGAGAAACACATTCACAAACAGATGGGGTGCATGGCTGGTTTCCTTCAGATCTTCGATCGCCACCAGATACTCACCGGAAAACGCATCTACTCCCACAAACGCCTCCCTCCGGCCTCGCCGGAGCCGGAAAAACCCGCCGCCTCACCGACGCGTTCAACGCCATCGCCGCCCAGAGAGGTCGTGAGTTCAGAGCCCAAGGCGAGTGTCCCCACTCTCCCCGTTCTCGAATTCAAAGAAGGCACGCGGTCCTCGTGGAAGTTCGCGAGAGAAGCTCCGAGGCTGTCCCTTGACAGCAGAGCCATCGTGGACGCGAAAGGAACGCTACACCTTCACCCGCGCGGCGAGATCCCTCCCGAAAACGACGCTGACAAGCAGCGTCGTTCCACCAGTGTCATTGCCAAGCTCATGGGCCTTGAGCCCTTACCAGATTCGGAGCCCGAGCCCGGGCCTGGGCCCGTGGCCAAGCTCCAGAGATCCGCGTCCGAGTCCAGAGTCCCCAGAGATCTGCCTCTGCCCCTAACGCAGTGTCGTTTCTTCGACCCCAACAATTTTACCGCTCAGGTCACAACCAATGTGGTTCACGAGAATAATAATAATAATAATAATAATAACAGTTATTATACTAACAACAACGCTGTCATCGATTCACGATTCGTTAGCAGCAGAGTCGCCGCAGATCCACCGAAACAGAGGTTAAAGAAGAGTTTCTACGACTCTGCCGATTTCTTCCCCGAGCCAAAACACACCGTTTCGGTGTACGGAGAGATTGAGAGGAGGCTGCGGGTGCGTGGGATAAACGAGCCTTCCAAGGATCTCCACACTCTGAAACACATCTTGGAAGCCTTGCAGCTCAAGGGGCTTTTGCATAACAGCACCAAACCAAACCAATCTCCCATTGTGGTTATGAAACCGGTTCGATCTGTGAATCGGACCGGGAGTGATTATTCTCCCCGGTCCAGTCCTCGCCGGAGCCCCAGAGTTGGCAACGAGGCTCGGAGGAGTGAACAAAATGAACGGAATGTAAGGGGGCAAGGTAGAACACAGAGTTCGAGTCCGAACCGTAGGAAGCAGGAACCGCAGAGGAGAGTGGGTGTTGATTCGAGGAGGGTGTCTGTTTCTGTGTCTCCGGTTCATTCGCCCAAGGTGAGTCCCAGAAGGAATGCAAATGCAACGGGTCAGCAAGTGCCAAGTGGGTCGCCCAGGATGATGATGAGAAAAAATAATGAGCGTAAGGAGAAGGTGTTGTTGGGTGGGGCAGAGGATGAATCGTCCACCATTTCAGACAACAGCTTCAGCACTAGTTCATATCCCGATACAGAGAGGTACAGGTTGGAAGAGTACAAGGAAGGGAAAGATCTGCTGGATAGGTGCGATAAGCTTCTCAACAGCATAGCAGAAATAACAGCTGCCAACGAGTTGCAACCGAGTCCAGTATCGGTTCTTGACTCGTCATTTTACAAGGATGACTGGTCTTCACCATCCCCGATAACAAAACGCTACATTGATTACAAAGATCAAGCGGCGGAGTCGGAAGATGATATGTGGAGTGCAGCATTGTGCAGCAGCGAGGAGGCAGCGTCCGAGGATTGTGATTTCGCTTACGTGTCGGAGATTCTGCGAGCTTGCACTTACTTGCCGGAAGACAGTGACATTTTTCTGTTACTGGAGAAGCAGCAATGTTTAAAGGGGAAAGATACCTCGAAGGCTTCGACGCTGCAGAGGCGGTTGATTTTCGACACTCTTCAGGAGATCCTGAACCGGAACCAGCAATTGCCGCCGTGGAAGGCGGTGTCGTACGGCGAACAGAGGCAGCAGATCTGGTCGGAGTTTCGGAGGATCCGAGAGAGGGAGGAATCGTGGGAGTCGGAGGACTTGTTTAAGGTGATATGCGGAGTGTTGAAGAAGGACATGGCGGATGAGATGCGAGGGTGGGGAGAATGGCCGGTGGAGATGGGAGATGTCGTGTTGGACATCGAACGTCTTGTGTTTAAGGATCTTGTTGGCGAAACCATTCGAGAACTCGCTTCGTTTTCACCTCAATCTCAATGTAACAACAAGCTACTACTACCCTCGCTTCGTAGGAAACTTGTCTTTTGA

Predicted protein sequences of Glyma10g03621

Limit To All Plant Sequences

>Glyma10g03621.1   sequence type=predicted peptide   gene model=Glyma10g03621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTAIVRDQNLEKHIHKQMGCMAGFLQIFDRHQILTGKRIYSHKRLPPASPEPEKPAASPTRSTPSPPREVVSSEPKASVPTLPVLEFKEGTRSSWKFAREAPRLSLDSRAIVDAKGTLHLHPRGEIPPENDADKQRRSTSVIAKLMGLEPLPDSEPEPGPGPVAKLQRSASESRVPRDLPLPLTQCRFFDPNNFTAQVTTNVVHENNNNNNNNNSYYTNNNAVIDSRFVSSRVAADPPKQRLKKSFYDSADFFPEPKHTVSVYGEIERRLRVRGINEPSKDLHTLKHILEALQLKGLLHNSTKPNQSPIVVMKPVRSVNRTGSDYSPRSSPRRSPRVGNEARRSEQNERNVRGQGRTQSSSPNRRKQEPQRRVGVDSRRVSVSVSPVHSPKVSPRRNANATGQQVPSGSPRMMMRKNNERKEKVLLGGAEDESSTISDNSFSTSSYPDTEVRYRLEEYKEGKDLLDRCDKLLNSIAEITAANELQPSPVSVLDSSFYKDDWSSPSPITKRYIDYKDQAAESEDDMWSAALCSSEEAASEDCDFAYVSEILRACTYLPEDSDIFLLLEKQQCLKGKDTSKASTLQRRLIFDTLQEILNRNQQLPPWKAVSYGEQRQQIWSEFRRIREREESWESEDLFKVICGVLKKDMADEMRGWGEWPVEMGDVVLDIERLVFKDLVGETIRELASFSPQSQCNNKLLLPSLRRKLVF*

>Glyma10g03621.2   sequence type=predicted peptide   gene model=Glyma10g03621   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTAIVRDQNLEKHIHKQMGCMAGFLQIFDRHQILTGKRIYSHKRLPPASPEPEKPAASPTRSTPSPPREVVSSEPKASVPTLPVLEFKEGTRSSWKFAREAPRLSLDSRAIVDAKGTLHLHPRGEIPPENDADKQRRSTSVIAKLMGLEPLPDSEPEPGPGPVAKLQRSASESRVPRDLPLPLTQCRFFDPNNFTAQVTTNVVHENNNNNNNNNSYYTNNNAVIDSRFVSSRVAADPPKQRLKKSFYDSADFFPEPKHTVSVYGEIERRLRVRGINEPSKDLHTLKHILEALQLKGLLHNSTKPNQSPIVVMKPVRSVNRTGSDYSPRSSPRRSPRVGNEARRSEQNERNVRGQGRTQSSSPNRRKQEPQRRVGVDSRRVSVSVSPVHSPKVSPRRNANATGQQVPSGSPRMMMRKNNERKEKVLLGGAEDESSTISDNSFSTSSYPDTERYRLEEYKEGKDLLDRCDKLLNSIAEITAANELQPSPVSVLDSSFYKDDWSSPSPITKRYIDYKDQAAESEDDMWSAALCSSEEAASEDCDFAYVSEILRACTYLPEDSDIFLLLEKQQCLKGKDTSKASTLQRRLIFDTLQEILNRNQQLPPWKAVSYGEQRQQIWSEFRRIREREESWESEDLFKVICGVLKKDMADEMRGWGEWPVEMGDVVLDIERLVFKDLVGETIRELASFSPQSQCNNKLLLPSLRRKLVF*

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