Glyma10g03610 - SoyBase

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Report for Sequence Feature Glyma10g03610

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2660110
stop:	2666300
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63420	AT	Annotation by Michelle Graham. TAIR10: Ggamma-subunit 1 \| chr3:23417383-23418405 FORWARD LENGTH=98	SoyBase	E_val: 2.00E-31	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0010541	GO-bp	Annotation by Michelle Graham. GO Biological Process: acropetal auxin transport	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
UniRef100_C6SXP2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXP2_SOYBN	SoyBase	E_val: 2.00E-73	ISS
UniRef100_Q9FDX9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Guanine nucleotide-binding protein subunit gamma 1 n=2 Tax=Arabidopsis thaliana RepID=GG1_ARATH	SoyBase	E_val: 8.00E-29	ISS

Expression Patterns of Glyma10g03610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03610

Paralog	Evidence	Comments
Glyma02g16190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g030900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g03610

Limit To All Plant Sequences

>Glyma10g03610.3   sequence type=transcript   gene model=Glyma10g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCAAACTGGGATGACCAAACAGACCAAGTGATCTAAAGAAAACAAAAGACCTTGGCAACAGTGTTTTCTTAATTGTTAGCACCTAAGCAGAGTTTAAAGGTATGAAAGGGACAGCAAGAGAGAAGAAAGAAAAAAAAGGCTCGCCTTTTGATGGCCTATATAATTTCGATTTCGATGGGTGCGCGGAGCACATGTAGAAAGAGAAAGGGCTTTTTTGAGTAATAGGATTATTATCAGTGAAAAGAGTTCCCTTTTTTCTCTGTAAATAAAAGGGTTGTTGTTATTATTATTATTGCCTAGTGTTTGTTTTCAGATCTGTGTCGTATTATTAAGCAGAACAAGCAAGGGTGCAAAGTGGGGGTGTTTTTTTCGCTGGATGAGTGGTAGCTGACACTCACTTATGGCGTCTGAAACGGCGTCGTCGGCGGATGAAGAAACCGTTGTTGTTGTTTCGGCTGCTGCGGGTGCAGGAGGAACTGATAAGAGAGGCAAGCACCGGATTCTTGCCGAACTGAAGCGTCTCGACCAAGAATCCAAGTTTCTTCAGACCACTAATTGCATTGCAAATTGACAAAACAATTTGAGAGAGAAATTTGCATCCTCTGTGAATGGCAGCAATCCATTTCCTTTGTTAAACTGCTCATAAATAACAATACATTTGTTATTTACAAGGGAAAGAATACGGAATAGACATTATGAAATTAGTTTCACAAATCAACCAGTTCCAGAGATTTTATATGTTGTTCCTTATTCCTAAGGAAGAATTGGAAGAGCTTGAGAAAACAGAAAATGTGTCGACCATATGCACAGAATTGCTACAAAACATAGACACTAGGCCTGATCCATTACTCCCAGAAGTCCATGGACCCGTAAATCTCTTATGGGATAGATGGTTTGAAGGGCCTCAAGATCCACAGGCATGTAGATGTTGGATACTTTGATTTGAAGCTGTGTCAATTGCCTTGCGTTGCAAATAGGATGCCACATATAACTGCATTAAAGTGACTCTGGAGCTGAAGAAAATGTTTGATGACATGTTATACCACGCACACTAATTCTATAATGGATCCTTGCTTTTATTACATTAGATTCTGTTCCGAATACTGTTTATGTGTAATCACATTCATATACTGCATTCAACTGAGAAGTATCATTATTTGTGCTTGTAATCCCAATCCAACTGTTAATGCACCTGACCTTGGTGGACTTTCATGTGTGCACGAGACGTTAGAGACATTTTAGCATCATTCAGCCTTGAAGGTGGTGTGGCTTTTGGAAAGGCCTTTACAATGCAATGGTTTGACGAGTCATCAACTAGTCCTGAATGATAACGAGATTTTTTGGGCAGAGACCTCTTGGGGTTGGGAGAGCAAAGAAAGCTCATAATCCCTTGTTTGAGTCATTTCACAATTAAATGTTATGATAAGATTTTGTAATCATGTTACTTCTAAGCCTTTTTAAGTTTTGGTGTTTTATTTAACAAGCCATTACTTTTTGCGTGCCCTTGTCCCTCTCTTATTTTGCCCTTCCACAAAATTGCTGTCAGCTGCTATTGTATTTAACCTTTTAATTC

Coding sequences of Glyma10g03610

Limit To All Plant Sequences

>Glyma10g03610.1   sequence type=CDS   gene model=Glyma10g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTGAAACGGCGTCGTCGGCGGATGAAGAAACCGTTGTTGTTGTTTCGGCTGCTGCGGGTGCAGGAGGAACTGATAAGAGAGGCAAGCACCGGATTCTTGCCGAACTGAAGCGTCTCGACCAAGAATCCAAGTTTCTTCAGGAAGAATTGGAAGAGCTTGAGAAAACAGAAAATGTGTCGACCATATGCACAGAATTGCTACAAAACATAGACACTAGGCCTGATCCATTACTCCCAGAAGTCCATGGACCCGTAAATCTCTTATGGGATAGATGGTTTGAAGGGCCTCAAGATCCACAGGCATGTAGATGTTGGATACTTTGA

>Glyma10g03610.3   sequence type=CDS   gene model=Glyma10g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTCCTTATTCCTAAGGAAGAATTGGAAGAGCTTGAGAAAACAGAAAATGTGTCGACCATATGCACAGAATTGCTACAAAACATAGACACTAGGCCTGATCCATTACTCCCAGAAGTCCATGGACCCGTAAATCTCTTATGGGATAGATGGTTTGAAGGGCCTCAAGATCCACAGGCATGTAGATGTTGGATACTTTGA

Predicted protein sequences of Glyma10g03610

Limit To All Plant Sequences

>Glyma10g03610.1   sequence type=predicted peptide   gene model=Glyma10g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASETASSADEETVVVVSAAAGAGGTDKRGKHRILAELKRLDQESKFLQEELEELEKTENVSTICTELLQNIDTRPDPLLPEVHGPVNLLWDRWFEGPQDPQACRCWIL*

>Glyma10g03610.3   sequence type=predicted peptide   gene model=Glyma10g03610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFLIPKEELEELEKTENVSTICTELLQNIDTRPDPLLPEVHGPVNLLWDRWFEGPQDPQACRCWIL*

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