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Report for Sequence Feature Glyma10g03470

Feature Type:gene_model
Chromosome:Gm10
Start:2531385
stop:2537709
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g03470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63280AT Annotation by Michelle Graham. TAIR10: NIMA-related kinase 4 | chr3:23378582-23381362 FORWARD LENGTH=555 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0589 KOG Serine/threonine protein kinase JGI ISS
PTHR24362Panther SERINE/THREONINE-PROTEIN KINASE NEK JGI ISS
PTHR24362:SF158Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_G7IDK6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase Nek2 n=1 Tax=Medicago truncatula RepID=G7IDK6_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233C7F6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C7F6 related cluster n=1 Tax=unknown RepID=UPI000233C7F6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g03470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03470
ParalogEvidenceComments
Glyma02g16350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g029000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g03470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g03470
>Glyma10g03470.1   sequence type=CDS   gene model=Glyma10g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCAGTATGAAATTCTTGAACAGATTGGAAGAGGTTCCTTTGCTTCAGCTCTACTTGTCAGGCACAGGCACGAAAACAAAAGGTATGTCCTTAAGAAGATACGTCTTGCCCGCCAGACTGATAGAACTCGTAGATCTGCTCACCAGGAGATGGAGCTTATCTCTAAAGTTCGCAATCCATTTATCGTAGAGTATAAAGATTCCTGGGTGGAAAAGGGTTGTTTTGTATGTATCGTCATTGGCTATTGTGAAGGAGGAGATATGGCCGAGGCAATTAAAAAGGCCAATGGCGTTTATTTTCCTGAAGAGAGGCTCTGTAAGTGGCTGGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGCCTTGCTAAAATGTTGACATGCGATGATCTTGCATCCTCAGTTGTGGGGACTCCAAGTTATATGTGCCCTGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGATATGCAAGCACTGATTAACAAAATAAACAAGTCGTTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGAGGGCTTGTTAAGAGTATGCTGCGGAAGAATCCTGAGCTTCGGCCAAGTGCTGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCCAGAAGAAGTACTTATCCATTCCAATGGTCTGACTCAAACTATGTAAGGAGGACTCAGTTTCTCGAGCCAGGATCTGTTTCTACTCTTTCTGACAGAGACAAACGATTGTCATTCAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAGCTAGGTTCTGTGTGTTCTACTCAAAGAGCACTAGGATTCTCTACTTGTTCAAAAGAGAAGCACTATGAACTATCTGTTGGCCTTGTCCGTGAAGAATGCAATTTTAACAAATCAAGAGACACAAAGTCCTCAACTGTTGATAGATTGCCAAGATTGAGATCAGCTAAGGAATATGCCACTCCCCGACGGCAGACTATACCATCAAAGATATCCTATACTGGTTCCAAGCGTGAGTTACTTCCATCCACTCCAGCAGGGGGTAAATTCACCCCACCAACTAGAAGAGCTTCCCTTCCACTGCCTACCAGAACCATGTGCACAACCACCCCTTATAGAGCTAATGTTGGTCTTCTTCGAGGTGTGGACTCTCCTGATATTTCTGTCAATGCACCGCGAATTGACAAGATGGCTGAATTCCCTTTGGCCTCTTGTGAGGATTCTCTCTTCCCTGTCCGTGGAACTTCATCAACTTCCGCTCAGTGCTCTTCTGGTTCGCCAAAGAGTGCTGACTGCTTAATCACGAAGGACAAGTGTACAATCCAAGTTGTGGACAAGGCCAGTGTCCCTTCCAGTGGCAGTGATGCTTGTCCTGCTGCTCCAGTTTCACATGGCAATGAATGCTCTGAACATGCTGTTTCAAGCCACTCCTCTGCTGAGTCTAGCAGGCACAGGTTTGACACCTCGTCTTACCAGCAACGTGCAGAGGCATTGGAGGGTTTGCTCGAGTTCTCTGCACGGCTCCTGCAGCAACAGAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTTGGTCCCGAGAAGGTTTCCCCAAGAGAAACAGCTATCTGGTTGGCTAAGAGCTTCAAGGAAACTGTGGCCTAA
Predicted protein sequences of Glyma10g03470
>Glyma10g03470.1   sequence type=predicted peptide   gene model=Glyma10g03470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQYEILEQIGRGSFASALLVRHRHENKRYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANGVYFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYVRRTQFLEPGSVSTLSDRDKRLSFSNDRALNPSISGTELGSVCSTQRALGFSTCSKEKHYELSVGLVREECNFNKSRDTKSSTVDRLPRLRSAKEYATPRRQTIPSKISYTGSKRELLPSTPAGGKFTPPTRRASLPLPTRTMCTTTPYRANVGLLRGVDSPDISVNAPRIDKMAEFPLASCEDSLFPVRGTSSTSAQCSSGSPKSADCLITKDKCTIQVVDKASVPSSGSDACPAAPVSHGNECSEHAVSSHSSAESSRHRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA*






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