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Report for Sequence Feature Glyma10g03411

Feature Type:gene_model
Chromosome:Gm10
Start:2460502
stop:2465726
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63240AT Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein | chr3:23364411-23366876 REVERSE LENGTH=547 SoyBaseE_val: 0ISS
GO:0032957GO-bp Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process SoyBaseN/AISS
GO:0046854GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation SoyBaseN/AISS
GO:0046855GO-bp Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG0565 KOG Inositol polyphosphate 5-phosphatase and related proteins JGI ISS
PTHR11200Panther INOSITOL 5-PHOSPHATASE JGI ISS
PTHR11200:SF29Panther INOSITOL PHOSPHATASE SKIP JGI ISS
PF03372PFAM Endonuclease/Exonuclease/phosphatase family JGI ISS
UniRef100_G7IDM2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Type I inositol-1,4,5-trisphosphate 5-phosphatase n=1 Tax=Medicago truncatula RepID=G7IDM2_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233CF6EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CF6E related cluster n=1 Tax=unknown RepID=UPI000233CF6E SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g03411 not represented in the dataset

Glyma10g03411 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g16430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g028400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g03411.1   sequence type=CDS   gene model=Glyma10g03411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGATGACAACTCGAAGAAAAGCAAGCTTTCATGGCCCAAAACGTTGGTCAAGAAGTGGTTCAACATTAAAAGCAAAAACGAGGACTTTCAGGCAGATGATGTCCTCTACGCAGGTGTCAATCAAGAGTGGAGGAACTGCTCACAGAGGGAGGAAGACACTATCAAGAGAAGCAAAACAGAGAGAGCAAAGAGGAGACACTCAGATAGAATGCGGCGAGGTAGAATTGACCGTGATGCAGCTCCGGTTACAGATGTGCATAACTATAGAATCTTTGCTGCCACTTGGAATGTAGCTGGAAAATCTCCTCCAAGTTATTTGAGTCTGGAAGATTGGCTTCACTCTTCTCCTCCTGCTGATATCTATGTTCTTGGGTTTCAAGAAATTGTACCTCTCAATGCTGGCAATGTTTTGGGCACAGAAGATAATGGCCCTGCCAGAAAGTGGCTATCTCTTATTAGGAAGACCCTAAACAGTCTTCCTGGAACAAGCGGTGAATGCCACACTACTTCACCGCTCCCTGACCCTATTGTAGAGTTAGATGCTGATTTTGAGGGATCAATGAGGCAGAAGACGACCTCTTTCTTCCATCGCCGGTCATTCCAATCCTTGAGTCATAGTATGAGAATGGACAATGACATGTCACTACCACAAGCATGCCTTGATCGTCGTCTCAGCGTATGTGATAGAATGATGTTTGGTCACAGGCCAAGTGACTATGACCCCTGTTATAGATGGGCTTCCTCGGATGATGAAAATGGCCCTGGTGACTCCCCAGTTGTAACACATTATTCACCAATGACATATAGAGGTTGCTTCTCTATGGAGGATAGATTTAGACAGACAGGACAGTCAAGATACTGTTTGGTTGCTAGTAAGCAAATGGTTGGAATATTTCTAACAGTTTGGGTGAAAAGTGATATAAGAGATGATGTTCACAATATGAAAGTGTCTTGTGTTGGCAGAGGATTAATGGGATATCTTGGAAACAAGGGTTCAATATCAATTAGCATGTCTTTGCACCAAACAAGCTTTTGCTTCATCTGTAGTCATTTGACTTCTGGACAAAAGGAAGGTGATGAACTAAGGAGGAATTCAGATGTAATGGAGATTCTCAGAAAGACAAGGTTTCCCCGAGTTCAAGACATGGGAGATGAGAGTTCTCCTCAGACAATTCTGGATCATGATCGAATAATTTGGCTGGGGGATTTAAATTACCGGATAGCCCTTTCTTACCGTGCAGCAAAGGCTCTTGTTGAGATGCATAATTGGAAGGTTCTGTTGGAGAATGACCAGCTACATATAGAGCGGAGACAAGGTCGAGTCTTTGAAGGATGGAATGAGGGGAAAATATATTTCCCTCCCACATACAAGTATTCAAACAATTCAGATAGATATGCAGGCGATGAAAGACAGTCAAAACAAAAGAGAAGAACTCCAGCATGGTGTGATCGTATCTTGTGGTATGGAAGAGGCCTCCGCCAATTATCGTACGTTCGTGGGGAGTCAAGATTCTCAGATCATAGACCAGTTTATAGCATGTTTCTGGCAGAAGTTGAGTCTGTTAGCCGTAACCGAATCAAAAAATGCTCTAGCTGCTCCAGTTCAAGGATTGAAGTGGAAGAGTTGTTGCCTCATTCACACGGTTACAGTTACACTGATTTGAGTTTCTTCTGA

>Glyma10g03411.1   sequence type=predicted peptide   gene model=Glyma10g03411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRDDNSKKSKLSWPKTLVKKWFNIKSKNEDFQADDVLYAGVNQEWRNCSQREEDTIKRSKTERAKRRHSDRMRRGRIDRDAAPVTDVHNYRIFAATWNVAGKSPPSYLSLEDWLHSSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLSLIRKTLNSLPGTSGECHTTSPLPDPIVELDADFEGSMRQKTTSFFHRRSFQSLSHSMRMDNDMSLPQACLDRRLSVCDRMMFGHRPSDYDPCYRWASSDDENGPGDSPVVTHYSPMTYRGCFSMEDRFRQTGQSRYCLVASKQMVGIFLTVWVKSDIRDDVHNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEILRKTRFPRVQDMGDESSPQTILDHDRIIWLGDLNYRIALSYRAAKALVEMHNWKVLLENDQLHIERRQGRVFEGWNEGKIYFPPTYKYSNNSDRYAGDERQSKQKRRTPAWCDRILWYGRGLRQLSYVRGESRFSDHRPVYSMFLAEVESVSRNRIKKCSSCSSSRIEVEELLPHSHGYSYTDLSFF*







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