Report for Sequence Feature Glyma10g03411
Feature Type: gene_model
Chromosome: Gm10
Start: 2460502
stop: 2465726
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g03411
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G63240 AT
Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein | chr3:23364411-23366876 REVERSE LENGTH=547
SoyBase E_val: 0 ISS
GO:0032957 GO-bp
Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process
SoyBase N/A ISS
GO:0046854 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation
SoyBase N/A ISS
GO:0046855 GO-bp
Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG0565
KOG
Inositol polyphosphate 5-phosphatase and related proteins
JGI ISS
PTHR11200 Panther
INOSITOL 5-PHOSPHATASE
JGI ISS
PTHR11200:SF29 Panther
INOSITOL PHOSPHATASE SKIP
JGI ISS
PF03372 PFAM
Endonuclease/Exonuclease/phosphatase family
JGI ISS
UniRef100_G7IDM2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Type I inositol-1,4,5-trisphosphate 5-phosphatase n=1 Tax=Medicago truncatula RepID=G7IDM2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233CF6E UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233CF6E related cluster n=1 Tax=unknown RepID=UPI000233CF6E
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g03411
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g03411
Paralog Evidence Comments
Glyma02g16430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g03411 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g028400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g03411
Coding sequences of Glyma10g03411
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g03411.1 sequence type=CDS gene model=Glyma10g03411 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGAGATGACAACTCGAAGAAAAGCAAGCTTTCATGGCCCAAAACGTTGGTCAAGAAGTGGTTCAACATTAAAAGCAAAAACGAGGACTTTCAGGCAGATGATGTCCTCTACGCAGGTGTCAATCAAGAGTGGAGGAACTGCTCACAGAGGGAGGAAGACACTATCAAGAGAAGCAAAACAGAGAGAGCAAAGAGGAGACACTCAGATAGAATGCGGCGAGGTAGAATTGACCGTGATGCAGCTCCGGTTACAGATGTGCATAACTATAGAATCTTTGCTGCCACTTGGAATGTAGCTGGAAAATCTCCTCCAAGTTATTTGAGTCTGGAAGATTGGCTTCACTCTTCTCCTCCTGCTGATATCTATGTTCTTGGGTTTCAAGAAATTGTACCTCTCAATGCTGGCAATGTTTTGGGCACAGAAGATAATGGCCCTGCCAGAAAGTGGCTATCTCTTATTAGGAAGACCCTAAACAGTCTTCCTGGAACAAGCGGTGAATGCCACACTACTTCACCGCTCCCTGACCCTATTGTAGAGTTAGATGCTGATTTTGAGGGATCAATGAGGCAGAAGACGACCTCTTTCTTCCATCGCCGGTCATTCCAATCCTTGAGTCATAGTATGAGAATGGACAATGACATGTCACTACCACAAGCATGCCTTGATCGTCGTCTCAGCGTATGTGATAGAATGATGTTTGGTCACAGGCCAAGTGACTATGACCCCTGTTATAGATGGGCTTCCTCGGATGATGAAAATGGCCCTGGTGACTCCCCAGTTGTAACACATTATTCACCAATGACATATAGAGGTTGCTTCTCTATGGAGGATAGATTTAGACAGACAGGACAGTCAAGATACTGTTTGGTTGCTAGTAAGCAAATGGTTGGAATATTTCTAACAGTTTGGGTGAAAAGTGATATAAGAGATGATGTTCACAATATGAAAGTGTCTTGTGTTGGCAGAGGATTAATGGGATATCTTGGAAACAAGGGTTCAATATCAATTAGCATGTCTTTGCACCAAACAAGCTTTTGCTTCATCTGTAGTCATTTGACTTCTGGACAAAAGGAAGGTGATGAACTAAGGAGGAATTCAGATGTAATGGAGATTCTCAGAAAGACAAGGTTTCCCCGAGTTCAAGACATGGGAGATGAGAGTTCTCCTCAGACAATTCTGGATCATGATCGAATAATTTGGCTGGGGGATTTAAATTACCGGATAGCCCTTTCTTACCGTGCAGCAAAGGCTCTTGTTGAGATGCATAATTGGAAGGTTCTGTTGGAGAATGACCAGCTACATATAGAGCGGAGACAAGGTCGAGTCTTTGAAGGATGGAATGAGGGGAAAATATATTTCCCTCCCACATACAAGTATTCAAACAATTCAGATAGATATGCAGGCGATGAAAGACAGTCAAAACAAAAGAGAAGAACTCCAGCATGGTGTGATCGTATCTTGTGGTATGGAAGAGGCCTCCGCCAATTATCGTACGTTCGTGGGGAGTCAAGATTCTCAGATCATAGACCAGTTTATAGCATGTTTCTGGCAGAAGTTGAGTCTGTTAGCCGTAACCGAATCAAAAAATGCTCTAGCTGCTCCAGTTCAAGGATTGAAGTGGAAGAGTTGTTGCCTCATTCACACGGTTACAGTTACACTGATTTGAGTTTCTTCTGA
Predicted protein sequences of Glyma10g03411
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g03411.1 sequence type=predicted peptide gene model=Glyma10g03411 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRDDNSKKSKLSWPKTLVKKWFNIKSKNEDFQADDVLYAGVNQEWRNCSQREEDTIKRSKTERAKRRHSDRMRRGRIDRDAAPVTDVHNYRIFAATWNVAGKSPPSYLSLEDWLHSSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLSLIRKTLNSLPGTSGECHTTSPLPDPIVELDADFEGSMRQKTTSFFHRRSFQSLSHSMRMDNDMSLPQACLDRRLSVCDRMMFGHRPSDYDPCYRWASSDDENGPGDSPVVTHYSPMTYRGCFSMEDRFRQTGQSRYCLVASKQMVGIFLTVWVKSDIRDDVHNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEILRKTRFPRVQDMGDESSPQTILDHDRIIWLGDLNYRIALSYRAAKALVEMHNWKVLLENDQLHIERRQGRVFEGWNEGKIYFPPTYKYSNNSDRYAGDERQSKQKRRTPAWCDRILWYGRGLRQLSYVRGESRFSDHRPVYSMFLAEVESVSRNRIKKCSSCSSSRIEVEELLPHSHGYSYTDLSFF*