SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G48140 | AT | Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:19686442-19687444 FORWARD LENGTH=200 | SoyBase | E_val: 1.00E-30 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0006869 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid transport | SoyBase | N/A | ISS |
| GO:0009561 | GO-bp | Annotation by Michelle Graham. GO Biological Process: megagametogenesis | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0008289 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipid binding | SoyBase | N/A | ISS |
| UniRef100_G7IDM6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Non-specific lipid-transfer protein n=1 Tax=Medicago truncatula RepID=G7IDM6_MEDTR | SoyBase | E_val: 4.00E-60 | ISS |
| UniRef100_UPI000233C7F5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C7F5 related cluster n=1 Tax=unknown RepID=UPI000233C7F5 | SoyBase | E_val: 2.00E-130 | ISS |
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Glyma10g03375 not represented in the dataset |
Glyma10g03375 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g16460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g028200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g03375.1 sequence type=CDS gene model=Glyma10g03375 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGACACCTCAGCTCTAATTCTCAAATGACACTCATATTATTATTAGCCCTTGCAATTTTCACTTCACTAAATTTGGTCACAGCACAGGTTATTACCACGCCCTGCATGACCTCTATGATTAACACTATCACCCCTTGTGCCAACTTCATCACTGGAAGCATTAACAATGGTTTAACTCCATCAGCTACGTGCTGTGATTCATTTCTGTCTTTGATAACCACTAGCGTGGATTGTGCTTGCCTTCTAGTATCAGCTAATGTTCCATTGCAAATACCCGTTAACAGAGTTCTTGCCCTCTTCCTTCCACAGGCATGCAACGTGGGTCAAATGCCTGCACTGTGCAAAGCCTCTGCTTCTCCTTTACCGGCTCCAGGCCCAGCTCTACTTGGATCAAATGACCAAACTCCTCCGCCTATTGCTTTTTCTCCTTTAAGCCCACAAGTTTCTAACACCATTTTCGAAGTTGAAGCTCCGAAATCTGAGATTCTGCAACCAGCATTGGCACCAGCATCAGTAGAATCTACACCAATGAAGCAGAAGCACCCACGAAAAGTTCAGGAATTAGACAAAGTGCAGAAACATCCTGTATGGGTTGGAAAGCAGCTGAGAAACTCATTAGGCGCTGGAAAATTCTAA
>Glyma10g03375.1 sequence type=predicted peptide gene model=Glyma10g03375 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGHLSSNSQMTLILLLALAIFTSLNLVTAQVITTPCMTSMINTITPCANFITGSINNGLTPSATCCDSFLSLITTSVDCACLLVSANVPLQIPVNRVLALFLPQACNVGQMPALCKASASPLPAPGPALLGSNDQTPPPIAFSPLSPQVSNTIFEVEAPKSEILQPALAPASVESTPMKQKHPRKVQELDKVQKHPVWVGKQLRNSLGAGKF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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