Report for Sequence Feature Glyma10g03300
Feature Type: gene_model
Chromosome: Gm10
Start: 2395950
stop: 2397105
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g03300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G32100 AT
Annotation by Michelle Graham. TAIR10: ovate family protein 16 | chr2:13647852-13648586 FORWARD LENGTH=244
SoyBase E_val: 5.00E-25 ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PF04844 PFAM
Protein of unknown function, DUF623
JGI ISS
UniRef100_G7IDP8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ethylene receptor n=1 Tax=Medicago truncatula RepID=G7IDP8_MEDTR
SoyBase E_val: 2.00E-76 ISS
UniRef100_I1L848 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L848_SOYBN
SoyBase E_val: 6.00E-113 ISS
Expression Patterns of Glyma10g03300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g03300
Paralog Evidence Comments
Glyma02g16530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g03300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g027500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g03300
Coding sequences of Glyma10g03300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g03300.2 sequence type=CDS gene model=Glyma10g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAAGCACAAGAAATCTGAAGCACCTCAACCTGAACCTGAACCTGAACATGTGTTGTTCAAATTCAGCTACTCATGAATGCGAATCTCCTCCATTGAGCCCCATAACTAGTTCCTCAAATCACAATAACACTACTCAATGTCCTTCTCCTTCTTCAATTATGATAAAGAACTTCAACTCTATCTATGACCCTACCTTAACCTCTCATGACCACTCTTTCAGCTCTACCTTCTTCGAGCCCGAACCCGCTGACTTCGCCACCGCCTTCGCCTCCCAACGCTTCTTCTTCTCCTCCCCGGGCCTCTCCAATTCCCTAGTTGAATACAACAACACCAACAAAAGTACTACTCGACACCCAGCATTGTTGAGAGAACATGGTGAGAAGATGAAGGAGGAGGAGGAGGAGGAGGAGAAGAAGAAGAAGGTGTTGTTCAAGGGGAGCGTGGCGGTGGCGACGTACTCGCCGGATCCTTACGTGGATTTCCGGCGGTCGATGCAGGAGATGGTGGAGGCGCGGCCGGAGCTGATGGACGTGAAGTCCAATTGGAATGTTCTTCACGAGCTTCTTCTATGCTATCTTGCGCTGAATCCAAAGAGCACACACAAGTTCATTCTTGGAGCCTTCGCTGATCTTCTCGTTAGCCTCATGTCATTCTAG
Predicted protein sequences of Glyma10g03300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g03300.2 sequence type=predicted peptide gene model=Glyma10g03300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASTRNLKHLNLNLNLNMCCSNSATHECESPPLSPITSSSNHNNTTQCPSPSSIMIKNFNSIYDPTLTSHDHSFSSTFFEPEPADFATAFASQRFFFSSPGLSNSLVEYNNTNKSTTRHPALLREHGEKMKEEEEEEEKKKKVLFKGSVAVATYSPDPYVDFRRSMQEMVEARPELMDVKSNWNVLHELLLCYLALNPKSTHKFILGAFADLLVSLMSF*