Report for Sequence Feature Glyma10g03270
Feature Type: gene_model
Chromosome: Gm10
Start: 2377587
stop: 2379072
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g03270
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G28150 AT
Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF868) | chr5:10135826-10136695 FORWARD LENGTH=289
SoyBase E_val: 3.00E-119 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PF05910 PFAM
Plant protein of unknown function (DUF868)
JGI ISS
UniRef100_I1L846 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L846_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q84M57 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q84M57_ORYSJ
SoyBase E_val: 5.00E-130 ISS
Expression Patterns of Glyma10g03270
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g03270
Paralog Evidence Comments
Glyma02g16560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g03270 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g027200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g03270
Coding sequences of Glyma10g03270
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g03270.1 sequence type=CDS gene model=Glyma10g03270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGGAGTTTCCTTCTTGTTTTGGAGAAAATGGTGTTCAGGTTGCTGACTCATCCTCATCAAGCACCACAAGAGCAGCACAAAATGTGGTCACGTGTGTCTATCAGTGCAAATTAAGAGGCCATTCAAGCTTGATTACAGTCTCGTGGACAAAAACTCTGATTGGTCAAGGCTTGAGTGTGGAAATTGATGACTTGGGAAAGCATTGCCTCTGCAAGGTTGAGATAAAGCCATGGCTCTTCTCAAAGAGAAAAGGGTCAAAGAATTTGGAGGTCCAATCTGGTAAAGTTGACATCTTTTGGGATTTGAGTAGTGCCAAGTTTGGTTCAGGGCCTGAGCCAATGGAGGGGTTCTACTTAGCGGTTGTGTTCAACAAGGAGACGGTGTTGCTCCTAGGGGATCTAAAAAAAGAGGCATGCAAGAAGATTGAGAGTGATTGTGCTTGCTTTTCTCACTCTGGTGCTATTTTCATTGCAAAGAGAGAGCACATTTTTGGGAAGAAGTTTTATGGTGCAAAGGCTCAGTTTTGTGACAAGGGGCAGGTGCATGATGTCACAATTGAGTGTGACACGTTAGGACTCAACGATCCTTCTCTTGTGATTCGAATTGATAGCAAGACAGTGATGAAGGTGAAGCGTCTCAAGTGGAAGTTCAGAGGGAATCACACCATTTTGGTGGATGGTGTTCCTGTTGAAGTGTTTTGGGATGTGCATAGTTGGCTCTTTGGGAATGCTATGGGCAATAATGCAGTGTTCATGTTCCAAACATGCATTTCAAATGACAAAATGTGGGAAGGGCAATCTGTTTCTGATCCCTCATGGGCTTCTTCTCAGCAGTTTAGGGATTCCCAATTGCAAGGCCTTGGGTTCTCTCTCATTTTGTATGCTTGGAAACATGAGTAG
Predicted protein sequences of Glyma10g03270
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g03270.1 sequence type=predicted peptide gene model=Glyma10g03270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MREFPSCFGENGVQVADSSSSSTTRAAQNVVTCVYQCKLRGHSSLITVSWTKTLIGQGLSVEIDDLGKHCLCKVEIKPWLFSKRKGSKNLEVQSGKVDIFWDLSSAKFGSGPEPMEGFYLAVVFNKETVLLLGDLKKEACKKIESDCACFSHSGAIFIAKREHIFGKKFYGAKAQFCDKGQVHDVTIECDTLGLNDPSLVIRIDSKTVMKVKRLKWKFRGNHTILVDGVPVEVFWDVHSWLFGNAMGNNAVFMFQTCISNDKMWEGQSVSDPSWASSQQFRDSQLQGLGFSLILYAWKHE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
