Glyma10g03250 - SoyBase

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Report for Sequence Feature Glyma10g03250

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2363412
stop:	2369068
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63180	AT	Annotation by Michelle Graham. TAIR10: TIC-like \| chr3:23336318-23340161 REVERSE LENGTH=978	SoyBase	E_val: 2.00E-60	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
UniRef100_G7IEC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein TIME FOR COFFEE n=1 Tax=Medicago truncatula RepID=G7IEC0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C67B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C67B related cluster n=1 Tax=unknown RepID=UPI000233C67B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g03250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03250

Paralog	Evidence	Comments
Glyma02g16580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g027000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g03250

Limit To All Plant Sequences

>Glyma10g03250.2   sequence type=CDS   gene model=Glyma10g03250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGAACCAGAGAATCCAGAAGATCATCCATGACCACCTCCACCAACGGATTTCCCAAACGCAGACATCGAACTATTGCTCTCAGAGACTCTTCCGAGGAAGGAGCTGTGGAATTGAGAGAAGGTACGAGTAAGAGAGGAAGGAATCGAGATAGAGATAGGGATTCGGCGAACAGGAGTAAGAGGAGGATAGGCTCTCACTCGCAAAGCACCGAAGAGAGCGTCGGAAACGAGCAAGATGACGACGTTTTAGACGTTGGTGTTTCTAAGATCCGTTCTCTTAATAATACGACGACATCGTTCGCCTCCGATCAAATCCATCGCCGGAGCTTCACGTCAGCGAAACCGCCGCCGTTCAAGATAACGGAGGAGATGATCGGCGTGAGCGTTCCGAGGAAGGCTCGTTCAGCCTCTGCGAAAAGGTCTTACGAAAGTTGGATTTCCGCAAGCAGCGGCGGGGAGGAGCTGAATTTCCGGCAGCGATCGAATTCCCCCGGAGGACAGAGTGTTGAACCGACCTCACCTTCTTCTTCGAATGTTTCTCTCAGGAAGAAGATGAAAGAGATAGAACCTGTTTCTAAGACATCCAAATCGTCTTCATCAGACATCGAGATTGAGATAGCTGAGCTTTTGTACGGCTTGAAGACTTCGAAGAACCACGAGTCTTCTATAAAGCTTGAAGCAAGCGTCAGTCCCTCTGATGATGCTGAGAAGAAGAAAATGGAAGACAACAACAATTCTTCCACCCTGTTTTCAAATAATTCAACTGAAGAGTTAAGCAGGATTCAGATTGAGCAACCTGCTGATGTGGATTATCATGTTGGTCCATCAATAGAGGCACCAAAAGAGAACATTGGGGATGCTTCAGCAGATGGAAGATCGGTTTCCCCTACTAGGGAATCGCCATCATGCTCCGAGTTGGATACTGAGAAACCATATTCAGCTTCAAACAGAGTGATCTCTGCTGTTCCAGATGCCAACGCCCAACTAGTAGGCAAGTTTGAGATAGATCTGATGGCTCCTCCTCCCATGGGGCTGTCCCCAGAAGGGGATGACTTGTCAAGGGGTGATTTCATATTAGAAACTAAAGCTTTGGCACTGGATGTGGAAATGAAGAAGGAAAATAGTGTCAAGGTGGAAAGACCAGTTAAGAAGGAGAAAATTCCAGAGGAAATTGAAGAGGCTAAAATGGTCACATTTATGGAGAAGTTGGATGTGCTAAAACATGATTTGGAGAAGAAAAACAATGTCCATGACATAAAGACAAACAATAAATTAGAAGAGCAGGATAGGAATAAGGAACTAGCTAGTATATCATCAAATCCCAAAGAAGAGAAAACCGTTCAATCTACTTCAATGCCTTTATCAACATCTGAATCAGGACGGCAGAGCAGTCTCTCTCCCACTGGATACAAGCCGCACTTGCAGCCAGTTGCAAAGACGGACAAAACCACAGGATCATTGACACTAAAGCATGCAAATTTTGTCCTATCTCAACGGAAACCAAAGAGATGTGCAACCCATTATTACATTGCTTGTAACATCTTACACCAGCAGTTTACAAAGATGAACCCGTCTTTGCCAGCAGCTATTGGCTCTGGTTCTCTGTGTAGCACAAAGCCCAACAATGTCAACTGTGTGCCCTCTGCAGAAAGTATGGCCATTGGGAAGCAATCTCAAAAACACTTGCCAATTGTAAACCAAAATGCTTCACAAGAGAAAGGGTGGGCCGTGACCAGCAATCCTAGTCTTACTGCTGCCAAATGTTCTAATAATTCCAACCCAATGGATTCAGCTCATAGGGTGCAGCTTGTGCTCCAGCAAGGTCCAAATCCTGGGCCAACTGGTAATCTAGTGCATGGTCCTGCTTTCCTCTATCCTCCAGGCCAGCATCAAGCGTCAGTTACAGCAACTACTAATCAGGCAGGAGCTGTGAATTCCCCTAACAGCACTTCCTCATATAATAAATTCCATAGTTCAGTTGGCGGATCTCCTGGTACCTCCTCAACTTTGCCAGTTGTTGCTCCTGGAATAAGCTTTAGCTACCCAAATTTTTCAGCCAATGGTTCTTCTCCGTATATGACAATAGTTCACAATAATGGGTATTCATTCCCTTTTTCAACTTCTCTTGGAGCAACCACGGCAATCAGAGGTCCGAGCCCTCCACAAGCAACACATGTACTTAGTGGGCCTTTCTACTCTTCTCAAATGTTCCATCCACAACAGCACCCTCAGTCACAAGCACTGGTTCAACCAAGTTATCTTAATGCTAGCACATCAAGTAGTTCATCATCTCATAAACAGTCACCAGGTGCACAAGTTAATGGCAGTAATATTTTGACCTCTACAACTATGGAGCAGCAGTCACAAAAGCGACAGACTTCACTGTCTCATCTTTGCAAGCATGAGACTGAGATGGGTGGAGGGAATGCACCTTCTGTTGCTAATCGAACATCTTACTCACAGAAGAATGTGCATGGCCAGAACTGTACAATTCCAGTGCAGCCAGTGAACTTTTCTTTTAAGCCATCTGCAACATCGGATATTGTTGGCAATGGTGGAAGTTTTGGTGACAAACAACAAAAGCAACAGGCTTTAAAGGGAGGAGTAGAGAATATACCATCTCAAGCATTTGCCATATCATTTGCTGCATATAATGGGACCAGTGTTCCTTCAAACCTTAACTTCTCATCCATGGCACAGAATCCTGTGATACTTCAAAGCCTGCCTGATATGGCATGGCAAGGATATCAAGCTGCAAGCACACCTCAGACTACTCAGCAAAAGACTTATTCAATTACTGAAGCAAAGAGTGGAGGAAATTCTTCACACCAAGATGATGAAAAGAAAATCTCTCGTGCTCAGTCTTCCAGCAATGGGCCAACCACCCTTGTTTTTGATAATTCATCAAAGAATCTTAACTTTATGCTATCTACTGCGAATGGAAACTGGTCTAATCACACCATTGCTTCAACTGCAATAACAAGTGTGCCACTCTCTAGTAATGCTTTAAGTTCTCAACAACCACCACATTTGCTTCAGCTTCCAAAGCAGCATGCTATGCAACAGCAGCAAGCTGCTATGGCAACTCGATATAAAGCACCACCTGCCAACAACACTCCAGCTGCAAAATTTGGAAACAATGCCCCCGTTTTCTCACAAACTCCTTCTCAATGCAAGAGTTCTAACCAAGCTTCTCACACTAAGGCCTCGAGTAGAACTGCAGATTCTCATATTCATCACTCATCTGTCATAACATCTAATGCTCCAACCCTCAAAAGTTTTTCCCAGGAACAAGGGAGAGTTTTGCCAGGTCATATGCAAATTTCTTTTGGGGGAAATTACATAACGCCCCTGCCACCCCAAGGGCAACCACTACTCAATAACAACCATCCTTTATGCGCAACAGCTCAAGGAACTCCATACAGTGGGGGCAATGCGAAGTCAAATTCAGAAGGAAGTAAAGTTAGTTCGTCGGTGAACGCTTCACAACTGCAACAAACTGAAAATTCTGCTGGGAGTGGCCAAAAATCTTCTCCAGTTTGTGGGAGAAATGTCCCGTCAATATTAAGTTCATGCCCCAGCCACCTATCAGAGCTAAAGTATTAG

Predicted protein sequences of Glyma10g03250

Limit To All Plant Sequences

>Glyma10g03250.2   sequence type=predicted peptide   gene model=Glyma10g03250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRTRESRRSSMTTSTNGFPKRRHRTIALRDSSEEGAVELREGTSKRGRNRDRDRDSANRSKRRIGSHSQSTEESVGNEQDDDVLDVGVSKIRSLNNTTTSFASDQIHRRSFTSAKPPPFKITEEMIGVSVPRKARSASAKRSYESWISASSGGEELNFRQRSNSPGGQSVEPTSPSSSNVSLRKKMKEIEPVSKTSKSSSSDIEIEIAELLYGLKTSKNHESSIKLEASVSPSDDAEKKKMEDNNNSSTLFSNNSTEELSRIQIEQPADVDYHVGPSIEAPKENIGDASADGRSVSPTRESPSCSELDTEKPYSASNRVISAVPDANAQLVGKFEIDLMAPPPMGLSPEGDDLSRGDFILETKALALDVEMKKENSVKVERPVKKEKIPEEIEEAKMVTFMEKLDVLKHDLEKKNNVHDIKTNNKLEEQDRNKELASISSNPKEEKTVQSTSMPLSTSESGRQSSLSPTGYKPHLQPVAKTDKTTGSLTLKHANFVLSQRKPKRCATHYYIACNILHQQFTKMNPSLPAAIGSGSLCSTKPNNVNCVPSAESMAIGKQSQKHLPIVNQNASQEKGWAVTSNPSLTAAKCSNNSNPMDSAHRVQLVLQQGPNPGPTGNLVHGPAFLYPPGQHQASVTATTNQAGAVNSPNSTSSYNKFHSSVGGSPGTSSTLPVVAPGISFSYPNFSANGSSPYMTIVHNNGYSFPFSTSLGATTAIRGPSPPQATHVLSGPFYSSQMFHPQQHPQSQALVQPSYLNASTSSSSSSHKQSPGAQVNGSNILTSTTMEQQSQKRQTSLSHLCKHETEMGGGNAPSVANRTSYSQKNVHGQNCTIPVQPVNFSFKPSATSDIVGNGGSFGDKQQKQQALKGGVENIPSQAFAISFAAYNGTSVPSNLNFSSMAQNPVILQSLPDMAWQGYQAASTPQTTQQKTYSITEAKSGGNSSHQDDEKKISRAQSSSNGPTTLVFDNSSKNLNFMLSTANGNWSNHTIASTAITSVPLSSNALSSQQPPHLLQLPKQHAMQQQQAAMATRYKAPPANNTPAAKFGNNAPVFSQTPSQCKSSNQASHTKASSRTADSHIHHSSVITSNAPTLKSFSQEQGRVLPGHMQISFGGNYITPLPPQGQPLLNNNHPLCATAQGTPYSGGNAKSNSEGSKVSSSVNASQLQQTENSAGSGQKSSPVCGRNVPSILSSCPSHLSELKY*

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