Glyma10g03230 - SoyBase

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Report for Sequence Feature Glyma10g03230

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2338122
stop:	2339887
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63200	AT	Annotation by Michelle Graham. TAIR10: PATATIN-like protein 9 \| chr3:23346140-23347379 FORWARD LENGTH=384	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
KOG0513	KOG	Ca2+-independent phospholipase A2	JGI		ISS
PTHR10470	Panther	PATATIN-RELATED	JGI		ISS
PF01734	PFAM	Patatin-like phospholipase	JGI		ISS
UniRef100_G7IEC3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Patatin-16 n=1 Tax=Medicago truncatula RepID=G7IEC3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L840	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L840_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g03230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03230

Paralog	Evidence	Comments
Glyma02g16600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g026800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g03230

Limit To All Plant Sequences

>Glyma10g03230.1   sequence type=CDS   gene model=Glyma10g03230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTAGTAACCTCACTCTGGAGATCTTCTCCAAACTGGAGCAAAAATGGCTCTCACATTGTAAAGCCACCAACAAAACTCGCATTCTCAGCATTGACGGCGGAGGAACCACCGCCATTGTCGCCGGCGAAGCTCTCATCTACCTCGAGGATCAGATCCGTGTTCACACCTCCGATCCTCACGCTCAGGTAGCCGATTTCTTCGACATCGTCGCCGGCACCGGCATTGGCGCCATCCTTGCCGCCATGATCACCGCCGGCGACGCCTTTGGTAGGCCGCTCTACACCGCCAGGGAAGCCGTCCGTCTCGTCTCGGAAAGAAACTCTGAACTCTACAAGCTCAAATCCGGCGGAATCTTCCGCCGGCGCCGGAGATTCTCCTCCAGGAGCATGGACAACGCGTTGAAGCAAGTGTTCCAGAGAAAGGAGGAGGACGGACGGTTGTTGACCTTGAAGGACACGTGTAAACCGCTCCTTATTCCTTGCTTCGACCTCAAGAGTTCCGCGCCGTTCGTGTTTTCGCGCGCCGACGCGTCCGAGTCTCCGAGCTTCGACTTCGAGCTCTGGAAGGTGTGCCGTGCCACGTCAGCGACGCCGAGCCACTTCAAGCCGTTCGACTTCGCTTCCGTCGACGGCAAGACCTCGTGCTCCGCCGTCGACGGCGGCCTAGTCATGAACAACCCTACTGCAGCGGCCGTCACGCACGTCCTCCATAACAAGCGCGATTTCCCGTCGGTGAACGGCGTGGAGGATCTGCTCGTCCTTTCCTTGGGGAACGGATCGTCGAACGCAAAAGCGTGCGAGACTCGCACGTGCTCAACGCCGTCGGTGGTTGACATTGTGCTCGACGGTGTTTCCGAGACCATTGACCAGATGTTAGGGAACGCCTTCTGCTGGAACCGTACGGACTACGTCAGAATCCAGGCTTTCGGTTTGGAAAGTGAAGCAATGAAGAAGGAAGAGGTTCTCAAAGAGAGGGGACTCGAGTCGTTACCGTTTGGCGGGAAGCGGTTACTGACAGAGACTAACGGAAACAGAATAGATAGCTTCGTGCAACGTCTTGTTGCTACCGGAAAACCAAGCCCGCCGTCAAGTCCCTGCAAGGATTCCGCCGTCAACCCTCTCGCTAACGGTCGCTAG

Predicted protein sequences of Glyma10g03230

Limit To All Plant Sequences

>Glyma10g03230.1   sequence type=predicted peptide   gene model=Glyma10g03230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFSNLTLEIFSKLEQKWLSHCKATNKTRILSIDGGGTTAIVAGEALIYLEDQIRVHTSDPHAQVADFFDIVAGTGIGAILAAMITAGDAFGRPLYTAREAVRLVSERNSELYKLKSGGIFRRRRRFSSRSMDNALKQVFQRKEEDGRLLTLKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFDFELWKVCRATSATPSHFKPFDFASVDGKTSCSAVDGGLVMNNPTAAAVTHVLHNKRDFPSVNGVEDLLVLSLGNGSSNAKACETRTCSTPSVVDIVLDGVSETIDQMLGNAFCWNRTDYVRIQAFGLESEAMKKEEVLKERGLESLPFGGKRLLTETNGNRIDSFVQRLVATGKPSPPSSPCKDSAVNPLANGR*

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