Glyma10g03210 - SoyBase

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Report for Sequence Feature Glyma10g03210

Feature Type:	gene_model
Chromosome:	Gm10
Start:	2317802
stop:	2320578
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g03210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G63130	AT	Annotation by Michelle Graham. TAIR10: RAN GTPase activating protein 1 \| chr3:23325108-23326715 FORWARD LENGTH=535	SoyBase	E_val: 0	ISS
GO:0000072	GO-bp	Annotation by Michelle Graham. GO Biological Process: M phase specific microtubule process	SoyBase	N/A	ISS
GO:0000280	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear division	SoyBase	N/A	ISS
GO:0000910	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0006406	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus	SoyBase	N/A	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0006913	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport	SoyBase	N/A	ISS
GO:0007000	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleolus organization	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0048527	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root development	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005635	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009504	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell plate	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0032153	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell division site	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1909	KOG	Ran GTPase-activating protein	JGI		ISS
PTHR25480	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25480:SF189	Panther		JGI		ISS
UniRef100_G7IEC9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ran GTPase activating protein n=2 Tax=Medicago truncatula RepID=G7IEC9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L839	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L839_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g03210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g03210 not represented in the dataset	Glyma10g03210 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g03210

Paralog	Evidence	Comments
Glyma02g16611	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g03210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g026700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g03210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g03210

Limit To All Plant Sequences

>Glyma10g03210.3   sequence type=transcript   gene model=Glyma10g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCAGAATAAAGTGGAGAGAGGAAGCGGAAAATCCACGCTTGGGGTTTTCCAATTCCCTGGCCCTATTTGAATCATTTCCCCCGCTCCACCAGATACCAGTACCATCTTTAAAACCCTCCAACCAATCCTCGCACTCTTTCTAGGGTTTCACTTTCACTCTTTCTCTTCGCGATTGCATTCTCCTTCAGTAACAGTAATTTATCATGAATGCTCACCTGAGATGTCATAGATGTTCGGAAATGCTGGATCTGTAAATTTTTAGGTTGCTTTGTAATGGATTCTACAGGGCAGGCATACCAACATCGCCCCCTTACGATTAAGTTATGGCCTCCTAGCCAGAGTACTAGGCTAATGCTTGTAGAGCGGATGACCAAGAACCTTACTACTCCGTCAATTTTCTCAAGAAAGTATGGACTGCTTAGCAAAGAAGAGGCTGAGGAGGATGCGAAGCACATTGAGAATGTAGCTTTTGCTACTGCAACCCAACATTTTGAGAAGGAGCCTGATGGTGATGGGAGTTCTGCTGTGCAAATTTATGCCAAGGAATCAAGTAAGCTCATGTTGGAGGCTTTGAAAAGGGGCCCAAAAGCAAAGGAGGATGGAGAGTTGATAAATGAGAAGGCAGCTGGTGCAACTGCTGAAACTGTTTTTGACATATCTGGGGGTCGCAGAGACTTTATTAGTGGGGAGGAAACTGCAGAACTTCTGAAACCATTGACGGGACCAAGCTCTTATAACAAGATATGTTTTAGCAATAGAAGTTTTGGCTTGGATGCTGCCCGTGTTGCTGAGCCCATTCTATTGTCAGTTAAGGATCAATTGAAAGAGGTAGATCTTTCAGATTTCATTGCTGGAAGACCAGAAGCAGAGGCTCTTGAAGTGATGACTATATTTTCTTCTGCCCTGGAAGGTAGTGTTTTGAGATATCTGAACCTGTCAAACAATGCCATGGGTGAAAAGGGGGTTAGAGCTTTTCGGTCACTCCTAAAATCACAAATTAACTTGGAGGAACTTTATTTGATGAATGATGGTATATCAGAGGAAGCTGCAAAAGCAGTTTCTGAATTGCTTCCTTCCACTGAGAAGCTGAGGGTTCTTCATTTCCATAACAACATGACTGGGGATGAAGGGGCAATTGCTATTGCTGAAATTGTGAAACGTTCCCCAGCTTTGGAAGATTTTCGGTGCTCATCTACCAGAGTTGGCTCTGATGGTGGAGTTGCCCTCGTTGAAGCACTTGGGGATTGTAAGCATTTGAGGAAGCTTGACTTGCGTGACAACATGTTTGGTGAAGAAGCTGGAGTTGCTCTAAGTAAAGTTGTACCTGCATTTACAGATCTTACAGAGATATACCTCAGTTATTTGAACTTGGAGGATGATGGTGCAGAAGCCCTTGCTAATGCCCTCAAGGAATCTGCACCATCACTGGAAATTTTGGATTTGGCTGGGAATGACATTACTGCAAAAGCTGCTGCTTCTGTGGCTGCCTGTATATCATCAAAACAATTCCTCACCAAGTTAAATTTATCTGAGAATGAACTGAAGGATGAAGGTGTTGTTTTGATCAGCAAGGCACTGGAAGGAGGTCATGGCCAATTAATTGAAGTTGATTTGAGCACTAACTCGATCACATGGTCAGGAGCTAAGCTGGTGGCTGAAGCTGTTGTGGGAAAACCAGGTTTTAAGTTGCTTAACATTAATGCTAACTTCATTTCTGATGAAGGGATTGATGAGTTGAAAAATATATTCAAAAACTCACCTGATATGCTGGGTCCTTTGGATGAGAATAATCCTGACGGAGAAGACCCTGATGAGGAGGCTGAAGAAGATGCTGATCATGATGAATTGGAATCAAAACTAAAGGGCCTTGACATTTAGGAAGATTCATAGGAACAAACATGCAACCTTTACTCAAGATTAATTTGTAGGCCATTTAATATTTCCGACAGACATACTTGTTTCAAGCACAATAGCTAGCTTTAATCTTGTATTTTAGATATTCTATTCCATGACCTGACATTTTAAAAGCATAATAGATGTATGCTCTTAATATATCTGGCAAAACAAGAAATGTTATTAGCTGCAGAAATTTTTGGGCTCTATTGTGCTTTAC

Coding sequences of Glyma10g03210

Limit To All Plant Sequences

>Glyma10g03210.2   sequence type=CDS   gene model=Glyma10g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTACAGGGCAGGCATACCAACATCGCCCCCTTACGATTAAGTTATGGCCTCCTAGCCAGAGTACTAGGCTAATGCTTGTAGAGCGGATGACCAAGAACCTTACTACTCCGTCAATTTTCTCAAGAAAGTATGGACTGCTTAGCAAAGAAGAGGCTGAGGAGGATGCGAAGCACATTGAGAATGTAGCTTTTGCTACTGCAACCCAACATTTTGAGAAGGAGCCTGATGGTGATGGGAGTTCTGCTGTGCAAATTTATGCCAAGGAATCAAGTAAGCTCATGTTGGAGGCTTTGAAAAGGGGCCCAAAAGCAAAGGAGGATGGAGAGTTGATAAATGAGAAGGCAGCTGGTGCAACTGCTGAAACTGTTTTTGACATATCTGGGGGTCGCAGAGACTTTATTAGTGGGGAGGAAACTGCAGAACTTCTGAAACCATTGACGGGACCAAGCTCTTATAACAAGATATGTTTTAGCAATAGAAGTTTTGGCTTGGATGCTGCCCGTGTTGCTGAGCCCATTCTATTGTCAGTTAAGGATCAATTGAAAGAGGTAGATCTTTCAGATTTCATTGCTGGAAGACCAGAAGCAGAGGCTCTTGAAGTGATGACTATATTTTCTTCTGCCCTGGAAGGTAGTGTTTTGAGATATCTGAACCTGTCAAACAATGCCATGGGTGAAAAGGGGGTTAGAGCTTTTCGGTCACTCCTAAAATCACAAATTAACTTGGAGGAACTTTATTTGATGAATGATGGTATATCAGAGGAAGCTGCAAAAGCAGTTTCTGAATTGCTTCCTTCCACTGAGAAGCTGAGGGTTCTTCATTTCCATAACAACATGACTGGGGATGAAGGGGCAATTGCTATTGCTGAAATTGTGAAACGTTCCCCAGCTTTGGAAGATTTTCGGTGCTCATCTACCAGAGTTGGCTCTGATGGTGGAGTTGCCCTCGTTGAAGCACTTGGGGATTGTAAGCATTTGAGGAAGCTTGACTTGCGTGACAACATGTTTGGTGAAGAAGCTGGAGTTGCTCTAAGTAAAGTTGTACCTGCATTTACAGATCTTACAGAGATATACCTCAGTTATTTGAACTTGGAGGATGATGGTGCAGAAGCCCTTGCTAATGCCCTCAAGGAATCTGCACCATCACTGGAAATTTTGGATTTGGCTGGGAATGACATTACTGCAAAAGCTGCTGCTTCTGTGGCTGCCTGTATATCATCAAAACAATTCCTCACCAAGTTAAATTTATCTGAGAATGAACTGAAGGATGAAGGTGTTGTTTTGATCAGCAAGGCACTGGAAGGAGGTCATGGCCAATTAATTGAAGTTGATTTGAGCACTAACTCGATCACATGGTCAGGAGCTAAGCTGGTGGCTGAAGCTGTTGTGGGAAAACCAGGTTTTAAGTTGCTTAACATTAATGCTAACTTCATTTCTGATGAAGGGATTGATGAGTTGAAAAATATATTCAAAAACTCACCTGATATGCTGGGTCCTTTGGATGAGAATAATCCTGACGGAGAAGACCCTGATGAGGAGGCTGAAGAAGATGCTGATCATGATGAATTGGAATCAAAACTAAAGGGCCTTGACATTTAG

>Glyma10g03210.3   sequence type=CDS   gene model=Glyma10g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTACAGGGCAGGCATACCAACATCGCCCCCTTACGATTAAGTTATGGCCTCCTAGCCAGAGTACTAGGCTAATGCTTGTAGAGCGGATGACCAAGAACCTTACTACTCCGTCAATTTTCTCAAGAAAGTATGGACTGCTTAGCAAAGAAGAGGCTGAGGAGGATGCGAAGCACATTGAGAATGTAGCTTTTGCTACTGCAACCCAACATTTTGAGAAGGAGCCTGATGGTGATGGGAGTTCTGCTGTGCAAATTTATGCCAAGGAATCAAGTAAGCTCATGTTGGAGGCTTTGAAAAGGGGCCCAAAAGCAAAGGAGGATGGAGAGTTGATAAATGAGAAGGCAGCTGGTGCAACTGCTGAAACTGTTTTTGACATATCTGGGGGTCGCAGAGACTTTATTAGTGGGGAGGAAACTGCAGAACTTCTGAAACCATTGACGGGACCAAGCTCTTATAACAAGATATGTTTTAGCAATAGAAGTTTTGGCTTGGATGCTGCCCGTGTTGCTGAGCCCATTCTATTGTCAGTTAAGGATCAATTGAAAGAGGTAGATCTTTCAGATTTCATTGCTGGAAGACCAGAAGCAGAGGCTCTTGAAGTGATGACTATATTTTCTTCTGCCCTGGAAGGTAGTGTTTTGAGATATCTGAACCTGTCAAACAATGCCATGGGTGAAAAGGGGGTTAGAGCTTTTCGGTCACTCCTAAAATCACAAATTAACTTGGAGGAACTTTATTTGATGAATGATGGTATATCAGAGGAAGCTGCAAAAGCAGTTTCTGAATTGCTTCCTTCCACTGAGAAGCTGAGGGTTCTTCATTTCCATAACAACATGACTGGGGATGAAGGGGCAATTGCTATTGCTGAAATTGTGAAACGTTCCCCAGCTTTGGAAGATTTTCGGTGCTCATCTACCAGAGTTGGCTCTGATGGTGGAGTTGCCCTCGTTGAAGCACTTGGGGATTGTAAGCATTTGAGGAAGCTTGACTTGCGTGACAACATGTTTGGTGAAGAAGCTGGAGTTGCTCTAAGTAAAGTTGTACCTGCATTTACAGATCTTACAGAGATATACCTCAGTTATTTGAACTTGGAGGATGATGGTGCAGAAGCCCTTGCTAATGCCCTCAAGGAATCTGCACCATCACTGGAAATTTTGGATTTGGCTGGGAATGACATTACTGCAAAAGCTGCTGCTTCTGTGGCTGCCTGTATATCATCAAAACAATTCCTCACCAAGTTAAATTTATCTGAGAATGAACTGAAGGATGAAGGTGTTGTTTTGATCAGCAAGGCACTGGAAGGAGGTCATGGCCAATTAATTGAAGTTGATTTGAGCACTAACTCGATCACATGGTCAGGAGCTAAGCTGGTGGCTGAAGCTGTTGTGGGAAAACCAGGTTTTAAGTTGCTTAACATTAATGCTAACTTCATTTCTGATGAAGGGATTGATGAGTTGAAAAATATATTCAAAAACTCACCTGATATGCTGGGTCCTTTGGATGAGAATAATCCTGACGGAGAAGACCCTGATGAGGAGGCTGAAGAAGATGCTGATCATGATGAATTGGAATCAAAACTAAAGGGCCTTGACATTTAG

Predicted protein sequences of Glyma10g03210

Limit To All Plant Sequences

>Glyma10g03210.2   sequence type=predicted peptide   gene model=Glyma10g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSTGQAYQHRPLTIKLWPPSQSTRLMLVERMTKNLTTPSIFSRKYGLLSKEEAEEDAKHIENVAFATATQHFEKEPDGDGSSAVQIYAKESSKLMLEALKRGPKAKEDGELINEKAAGATAETVFDISGGRRDFISGEETAELLKPLTGPSSYNKICFSNRSFGLDAARVAEPILLSVKDQLKEVDLSDFIAGRPEAEALEVMTIFSSALEGSVLRYLNLSNNAMGEKGVRAFRSLLKSQINLEELYLMNDGISEEAAKAVSELLPSTEKLRVLHFHNNMTGDEGAIAIAEIVKRSPALEDFRCSSTRVGSDGGVALVEALGDCKHLRKLDLRDNMFGEEAGVALSKVVPAFTDLTEIYLSYLNLEDDGAEALANALKESAPSLEILDLAGNDITAKAAASVAACISSKQFLTKLNLSENELKDEGVVLISKALEGGHGQLIEVDLSTNSITWSGAKLVAEAVVGKPGFKLLNINANFISDEGIDELKNIFKNSPDMLGPLDENNPDGEDPDEEAEEDADHDELESKLKGLDI*

>Glyma10g03210.3   sequence type=predicted peptide   gene model=Glyma10g03210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSTGQAYQHRPLTIKLWPPSQSTRLMLVERMTKNLTTPSIFSRKYGLLSKEEAEEDAKHIENVAFATATQHFEKEPDGDGSSAVQIYAKESSKLMLEALKRGPKAKEDGELINEKAAGATAETVFDISGGRRDFISGEETAELLKPLTGPSSYNKICFSNRSFGLDAARVAEPILLSVKDQLKEVDLSDFIAGRPEAEALEVMTIFSSALEGSVLRYLNLSNNAMGEKGVRAFRSLLKSQINLEELYLMNDGISEEAAKAVSELLPSTEKLRVLHFHNNMTGDEGAIAIAEIVKRSPALEDFRCSSTRVGSDGGVALVEALGDCKHLRKLDLRDNMFGEEAGVALSKVVPAFTDLTEIYLSYLNLEDDGAEALANALKESAPSLEILDLAGNDITAKAAASVAACISSKQFLTKLNLSENELKDEGVVLISKALEGGHGQLIEVDLSTNSITWSGAKLVAEAVVGKPGFKLLNINANFISDEGIDELKNIFKNSPDMLGPLDENNPDGEDPDEEAEEDADHDELESKLKGLDI*

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