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Report for Sequence Feature Glyma10g03190

Feature Type:gene_model
Chromosome:Gm10
Start:2306332
stop:2313674
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03160AT Annotation by Michelle Graham. TAIR10: FZO-like | chr1:761321-766053 FORWARD LENGTH=912 SoyBaseE_val: 0ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0009228GO-bp Annotation by Michelle Graham. GO Biological Process: thiamine biosynthetic process SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0016226GO-bp Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042793GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0031969GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast membrane SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0004789GO-mf Annotation by Michelle Graham. GO Molecular Function: thiamine-phosphate diphosphorylase activity SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG0448 KOG Mitofusin 1 GTPase, involved in mitochondrila biogenesis JGI ISS
PTHR11649Panther MSS1/TRME-RELATED GTP-BINDING PROTEIN JGI ISS
PTHR11649:SF44Panther JGI ISS
PF01926PFAM GTPase of unknown function JGI ISS
PF02581PFAM Thiamine monophosphate synthase/TENI JGI ISS
UniRef100_G7IED3UniRef Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein engA n=1 Tax=Medicago truncatula RepID=G7IED3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233C67AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C67A related cluster n=1 Tax=unknown RepID=UPI000233C67A SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma02g16630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g026400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g03190.1   sequence type=CDS   gene model=Glyma10g03190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACCTTGTTCCGTCACATCCCCTTCGTCACCGTTCACCGCAATCATCCCACGCCACACGCACTCTCGCTCTCCCTCTCTCCCCCTCCGCGTCGCGCGTGCTTTTCCCATCAACTCCCTCTCCAACAATGCTGAATCCTCCGCCCAGTTCAACCAGCAACTCTTCCGCCCCAGCTACCCGCCGCAGCAGCCCCGAACCCTCTTCCCCGGCGGCTACAAGAGGCCCGAGCTCAATGTCCCCACTCTCGTCCTCCAACTCGACCCCGACGAGTTTCTCAGCGCCGACACCGACGCCTTGGCTTTAATTGACAAGGCCGTCTCCAAATGGGTCGGAATCGTCGTCCTCGCTAGCAACCAAGCCAGCGGCGGCAAGCTCTACGAGGCTGCATGCTCGTTGAAGTCCCTGCTTCAAGACCGCGCCTATTTGCTTGTCGCCGAGCGCGTCGATATCGCCGCCGCTGCCGCCGCTAGCGGAGTTTTGCTCTCTGACCAAGGCCTTCCTACTGTTGTTGCTAGAAATATGATGTTGGATTCAAAGTCCGAATTGGTGGTTCTTCCCTTGGTTGCTAGGATTGTTCGAACTGTGGATGCTGCGGTGAATGCATCTAAGTCAGAAGGTGCTGATTTTCTTATATATGGTGGTGGTGACCTGAATCGTGTTGGTCAGGAAGTTGGTTCTGTGTATGAGAGCGTGAAGATACCTATTTTTGTCTCGTGTGGGAAAAACATGTCTTATACTGATGCATCGGGTTTGTTTGCCTCTGGTGCTAGTGGTTTTGTTACTAGTTTGGAAAATTTTGGTTTGTTTGGTGATGAGTTTTTGCACAAACTGTTTGGCACTGTGTATGCAAGTGATGATGGTGGGAATATGAGTGAGAATAAACTGAATGTAGATAATGGTTTTCAGAGTGAGACAGAGGTTGTTGCTGGGTTTGTTAAGCTGGAGGATAGGGAAAAACTGTTAATCGAAACAGAGAGATTGGTGTTGAATGAAGCTATTGAAGCTATCAAGAGGGCTGCACCTCTGATGGAGGAGGTTTCACTTCTTAATGATGCGGTTTCTCAAATTGATGAGCCATTCTTACTGGTTATAGTGGGGGAATTCAACTCTGGTAAATCTACCGTGATTAATGCGCTTCTTGGAGAAAGATATCTCAAAGAGGGAGTTGTTCCAACAACTAATGAGATCACATTTTTACGATATACTGACTTAGATATTGAACAACAACGGTGTGAAAGGCATCCAGATGGCCAATATATTTGCTACATTCCTGCTCCAATTCTTAAAGAGATGACCATTGTTGATACACCTGGAACTAATGTGATTCTTCAGAGGCAGCAGCGTCTTACAGAGGAATTTGTACCCCGTGCAGATTTACTTCTTTTTGTCATTTCTGCTGATCGCCCTTTAACTGGAAGTGAGATTGCTTTTCTTCGTTATTCTCAGCAGTGGAAAAAGAAAGCGGTCTTTGTCTTGAATAAAGCTGACATATATCAGAATAATCATGAGCTTGAGGAAGCAATGTCCTTCATTAAGGACAATATACAGAGATTGCTGAATACTGAAGATGTCATGTTATATCCTGTATCTGCTCGGTCTGCTCTTGAAGCAAAACTTATGGCTACCTCTAATGCTGGGAGGCTAAATGAAGAATTATCAACCTCTTATTCTCATTATGGTGCCAGCAGTTTCTCTGAACTTGAAAACTTCTTGTATAGCTTTCTAGATGGGTCAACAATCCCAGGAATGGACAGAATGAGGCTCAAACTTGAAACACCTGTTGCAATTGCAGATAGACTAATTTCTGCATGTGAAACTCTTGTGACACAAGACTACCGATATGCCAAGCAGGATTTGGCTGCAGTGGAAGACATTGTTAATAATGTAAATGATTTTGCTTTGAATATGGTAACTGAGAGCCTTTCTTGGAGGAGACCAACTCTGTCTTTGATTGAAACTACGAAATCACGTGTTGTAGAGCTTGTTGAAGCTAATCTGCAATTGTCAAATTTTGATATTATTGCTTCATATGCCTTCAAAGGAGAAAAAAATGCACTGCCTACTACCTCAAGGATTCAGAATGACATAATTGGTCCTGCTGTCTCTGCCGTCCAGAAAATACTTGAAGAATACGAAAATTGGTTATATTCCAAATATACCCAACAAGGGAGACTATACAAGGAATCCTTTGAAAAACGATGGCCTTCCTTGAGCCATGAAAGTAGTCAAATAAATTTTGGGACCGACCAGTTGCTAAAGAAAGTGGATCAAGCTGGCAGCCAGGTGATTGACAATTTCAGCAGCATTGCAGTTTCTAAGTCATTTGAGCAAGAAGTACGGGAAATGATTTTAGGGACTTTTGGTCAACTAGGTGTGGCTGGTTTATCTGCTTCGCTACTGACATCTGTGCTGCAAACCACCTTGGAAGATCTTCTTGCTCTTGGTATTTGTTCAGCTGGCGGGTATCTAGCTATATCAACTTTTCCAGCTCGTAGGCAGAAGGTGATAGATAAGGTGAAAACAAAAGCAGAGACCTTGGCATATGAACTTGAAGAGGCCATGAAGAAGGATTTGACTGAAGCCATAGAAAATTTGGATACCTTTGTGAAAGTCCTAAGCAAACCTTACCAAGATGAAGCGCAGAATAGACTTAACAGGCTAGTAGAGATTCAAGAAGAATTATCAAATGTTGAGAAAAAACTTAGAACGCTACAAATTGACATTCAAAATCTTCATGTGTCATGA

>Glyma10g03190.1   sequence type=predicted peptide   gene model=Glyma10g03190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPCSVTSPSSPFTAIIPRHTHSRSPSLPLRVARAFPINSLSNNAESSAQFNQQLFRPSYPPQQPRTLFPGGYKRPELNVPTLVLQLDPDEFLSADTDALALIDKAVSKWVGIVVLASNQASGGKLYEAACSLKSLLQDRAYLLVAERVDIAAAAAASGVLLSDQGLPTVVARNMMLDSKSELVVLPLVARIVRTVDAAVNASKSEGADFLIYGGGDLNRVGQEVGSVYESVKIPIFVSCGKNMSYTDASGLFASGASGFVTSLENFGLFGDEFLHKLFGTVYASDDGGNMSENKLNVDNGFQSETEVVAGFVKLEDREKLLIETERLVLNEAIEAIKRAAPLMEEVSLLNDAVSQIDEPFLLVIVGEFNSGKSTVINALLGERYLKEGVVPTTNEITFLRYTDLDIEQQRCERHPDGQYICYIPAPILKEMTIVDTPGTNVILQRQQRLTEEFVPRADLLLFVISADRPLTGSEIAFLRYSQQWKKKAVFVLNKADIYQNNHELEEAMSFIKDNIQRLLNTEDVMLYPVSARSALEAKLMATSNAGRLNEELSTSYSHYGASSFSELENFLYSFLDGSTIPGMDRMRLKLETPVAIADRLISACETLVTQDYRYAKQDLAAVEDIVNNVNDFALNMVTESLSWRRPTLSLIETTKSRVVELVEANLQLSNFDIIASYAFKGEKNALPTTSRIQNDIIGPAVSAVQKILEEYENWLYSKYTQQGRLYKESFEKRWPSLSHESSQINFGTDQLLKKVDQAGSQVIDNFSSIAVSKSFEQEVREMILGTFGQLGVAGLSASLLTSVLQTTLEDLLALGICSAGGYLAISTFPARRQKVIDKVKTKAETLAYELEEAMKKDLTEAIENLDTFVKVLSKPYQDEAQNRLNRLVEIQEELSNVEKKLRTLQIDIQNLHVS*







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